Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6T01_RS07300 Genome accession   NZ_CP145856
Coordinates   1600945..1602915 (-) Length   656 a.a.
NCBI ID   WP_148512819.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1595945..1607915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS07280 (V6T01_07255) - 1596448..1597377 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein -
  V6T01_RS07285 (V6T01_07260) amiE 1597370..1598455 (-) 1086 WP_021143811.1 ABC transporter ATP-binding protein Regulator
  V6T01_RS07290 (V6T01_07265) amiD 1598465..1599391 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  V6T01_RS07295 (V6T01_07270) amiC 1599391..1600884 (-) 1494 WP_048673698.1 ABC transporter permease Regulator
  V6T01_RS07300 (V6T01_07275) amiA 1600945..1602915 (-) 1971 WP_148512819.1 peptide ABC transporter substrate-binding protein Regulator
  V6T01_RS07305 (V6T01_07280) amiA 1603097..1605067 (-) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator
  V6T01_RS07310 (V6T01_07285) pta 1605303..1606286 (-) 984 WP_155198472.1 phosphate acetyltransferase -
  V6T01_RS07315 (V6T01_07290) - 1606302..1607198 (-) 897 WP_410541399.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72950.33 Da        Isoelectric Point: 5.1980

>NTDB_id=852964 V6T01_RS07300 WP_148512819.1 1600945..1602915(-) (amiA) [Streptococcus salivarius strain KSS1]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPAIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELTKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFDSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMPSYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPIHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=852964 V6T01_RS07300 WP_148512819.1 1600945..1602915(-) (amiA) [Streptococcus salivarius strain KSS1]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAGACATTGGATTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAATGATAAATATGGTAACTTGGTACCTGCTATTGCC
AAGGATTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAGGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCGGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAGAAGACAGAGTCAATTT
ATTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAACGGTACTGATAAAGACTTCTCTAAAGTTGGTGTTAAA
GCACTTGATGACTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTTAACGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAGTTGACTAAAAATGAAAACTATTGGGATAAGAAG
AATGTTCACTTTGATGGCATCAAACTTTCTTTCTACGATGCATCTGACCAAGAATCACTTGTCCGTAATTTCACTGATGG
CGCTTATAGTCAAGCACGTTTATATCCAACAAGCTCAAACTTTGATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTCGCTATTGACCGTAC
TGCTTATTCAGCACAACTTAATGGTGAAAAGGGTGCAGCACTTGCTGTTCGTAACCTTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGCCTTCATATGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTCTCTTCAACGCTGATAAGGCTAAGACTGAATTTAATAAGGCTAAGGAAGCTCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCTGCAAAACCAACTGTAGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTCGGTAAAGAAAATGTGGTTGTAGACGTTCATCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCAGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCGCCTGACTATGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
TGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTTGAGCCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.457

100

0.755
  amiA3 Streptococcus thermophilus LMG 18311

75.038

100

0.752
  amiA3 Streptococcus thermophilus LMD-9

75.038

100

0.752