NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	QYR59_RS04760	Genome accession	NZ_CP129326
Coordinates	951504..952349 (+)	Length	281 a.a.
NCBI ID	WP_003099573.1	Uniprot ID	A0A1J0MYY1
Organism	Streptococcus iniae strain P3SAB
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 946504..957349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYR59_RS04735 (QYR59_04735)	-	946662..947948 (+)	1287	WP_367562039.1	PTS sugar transporter subunit IIC	-
QYR59_RS04740 (QYR59_04740)	-	947945..948784 (+)	840	WP_003099563.1	alpha/beta hydrolase	-
QYR59_RS04745 (QYR59_04745)	ylqF	949254..950108 (+)	855	WP_367562040.1	ribosome biogenesis GTPase YlqF	-
QYR59_RS04750 (QYR59_04750)	-	950092..950877 (+)	786	WP_367562478.1	ribonuclease HII	-
QYR59_RS04755 (QYR59_04755)	-	950890..951438 (+)	549	WP_003099570.1	sugar O-acetyltransferase	-
QYR59_RS04760 (QYR59_04760)	dprA	951504..952349 (+)	846	WP_003099573.1	DNA-processing protein DprA	Machinery gene
QYR59_RS04765 (QYR59_04765)	topA	952446..954582 (+)	2137	Protein_876	type I DNA topoisomerase	-
QYR59_RS04770 (QYR59_04770)	-	954676..955561 (-)	886	Protein_877	LysR family transcriptional regulator	-
QYR59_RS04775 (QYR59_04775)	-	955727..956786 (+)	1060	Protein_878	PTS transporter subunit IIC	-

Sequence

Protein

Download Length: 281 a.a. Molecular weight: 31550.74 Da Isoelectric Point: 9.9826

                                >NTDB_id=852163 QYR59_RS04760 WP_003099573.1 951504..952349(+) (dprA) [Streptococcus iniae strain P3SAB]

MNNFELYKLKKAGLKNHHILNIIHYSQQTKKSLSLRNMAVVSGTSKPCLFLENYKLLNIKELRVEFKKYPSFSILDKTYP

LALKEIDNPPVLLFYQGNLELLNRHKLAVVGSRKSSAVGNKSVESLIKQLNNQFVIVSGLARGIDTVAHFSSIKQGGETI

AVIGSGLDIYYPKENRRLQEFIAEKHLLLSEYCPKEAPLAHHFPERNRIIAGLSMGVLVAEAKWRSGSLITCRFALDYGR

DIFVVPGAILDKQSQGGNHLIQEGAKLVTKGLDIISEYQFL

Nucleotide

Download Length: 846 bp

                                >NTDB_id=852163 QYR59_RS04760 WP_003099573.1 951504..952349(+) (dprA) [Streptococcus iniae strain P3SAB]

ATGAATAACTTTGAACTGTATAAATTAAAGAAAGCTGGCCTAAAAAATCATCATATTCTAAATATCATTCATTATAGCCA

GCAAACTAAGAAATCTCTATCACTTAGAAATATGGCTGTTGTTTCAGGAACAAGTAAACCATGTCTGTTTTTAGAAAATT

ACAAGCTGTTAAATATAAAAGAGTTACGAGTAGAATTTAAGAAGTATCCCAGCTTTTCAATTTTAGACAAGACCTATCCC

CTTGCTTTAAAAGAAATTGATAATCCGCCAGTATTATTATTTTATCAAGGAAATTTAGAGCTTTTAAATCGGCATAAATT

AGCAGTGGTAGGGTCAAGGAAATCCTCAGCAGTTGGAAACAAATCTGTTGAATCTCTCATCAAGCAACTTAATAATCAGT

TTGTTATTGTTAGTGGGTTGGCTAGAGGAATTGATACTGTAGCTCATTTTTCGAGCATCAAACAAGGTGGAGAGACTATT

GCTGTTATTGGATCAGGGTTAGACATTTATTATCCTAAGGAAAATAGAAGATTACAGGAGTTTATTGCTGAAAAGCATTT

ATTATTAAGTGAATATTGCCCTAAGGAAGCACCTTTAGCACATCATTTTCCAGAACGAAATCGCATAATTGCAGGCTTAT

CTATGGGAGTTTTAGTGGCAGAAGCCAAATGGCGTTCTGGTAGTCTAATCACTTGTCGCTTTGCACTTGATTACGGTAGG

GATATTTTTGTTGTTCCAGGCGCCATCCTTGACAAACAGTCGCAGGGAGGGAATCACCTCATTCAAGAGGGAGCGAAGCT

TGTTACAAAAGGACTTGACATCATTTCTGAATACCAATTTTTATAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A1J0MYY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Streptococcus mutans UA159	66.786	99.644	0.665
dprA/cilB/dalA	Streptococcus mitis SK321	57.5	99.644	0.573
dprA/cilB/dalA	Streptococcus pneumoniae Rx1	57.143	99.644	0.569
dprA/cilB/dalA	Streptococcus pneumoniae D39	57.143	99.644	0.569
dprA/cilB/dalA	Streptococcus pneumoniae R6	57.143	99.644	0.569
dprA/cilB/dalA	Streptococcus pneumoniae TIGR4	57.143	99.644	0.569
dprA/cilB/dalA	Streptococcus mitis NCTC 12261	56.786	99.644	0.566
dprA	Lactococcus lactis subsp. cremoris KW2	54.643	99.644	0.544

Detailed information NTG0852163