Detailed information NTG0852148

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: QYR59_RS00845
• Genome accession: NZ_CP129326
• Coordinates: 128211..129227 (+)
• Length: 338 a.a.
• NCBI ID: WP_367562492.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain P3SAB
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 123211..134227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYR59_RS00835 (QYR59_00835)	-	126893..127258 (+)	366	WP_003098799.1	DUF1033 family protein	-
QYR59_RS00840 (QYR59_00840)	comYA	127319..128260 (+)	942	WP_367561726.1	competence type IV pilus ATPase ComGA	Machinery gene
QYR59_RS00845 (QYR59_00845)	comYB	128211..129227 (+)	1017	WP_367562492.1	competence type IV pilus assembly protein ComGB	Machinery gene
QYR59_RS00850 (QYR59_00850)	comGC/cglC	129228..129554 (+)	327	WP_367562310.1	competence type IV pilus major pilin ComGC	Machinery gene
QYR59_RS00855 (QYR59_00855)	comGD	129514..129942 (+)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
QYR59_RS00860 (QYR59_00860)	comGE	129914..130207 (+)	294	WP_031239176.1	competence type IV pilus minor pilin ComGE	-
QYR59_RS00865 (QYR59_00865)	comGF	130236..130616 (+)	381	WP_367562091.1	competence type IV pilus minor pilin ComGF	-
QYR59_RS00870 (QYR59_00870)	comGG	130606..130959 (+)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
QYR59_RS00875 (QYR59_00875)	comYH	131021..131977 (+)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
QYR59_RS00880 (QYR59_00880)	-	132034..133230 (+)	1197	WP_367562311.1	acetate kinase	-
QYR59_RS00885 (QYR59_00885)	-	133353..133556 (+)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
QYR59_RS00890 (QYR59_00890)	-	133569..134021 (+)	453	WP_003098820.1	hypothetical protein	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 39250.44 Da
• Isoelectric Point: 9.6521

>NTDB_id=852148 QYR59_RS00845 WP_367562492.1 128211..129227(+) (comYB) [Streptococcus iniae strain P3SAB]
MDISLSKKSKQRKLSAKKQYQLMQLFHNLFASGFSLSEIVAFLEKSHLLEAKYLDRIKENLISGRSLAEMTRSLGYPDSI
VTQISFADIHGNTKESLFKIMHYLDKVAQVRKKTLEVLTYPLILLSFLIAIMFGLRHYLLPQIEESNGLTQFLTYFPLVF
LIFLILGLLLTFYLSIRWRKHSQLKQVKQFSRIPFLKDYISLYITAYFAREWGSLMGQGLELSSILTVMAKEQSPLVKEI
GQDMQAYFLEGGTLHDKVLQYPFFQKELSLMIEYGDIKAKLGQELEIYAQLTWERFFSRLFQATQWIQPIIFLFVALIIV
CIYAPMLLPMYHSIGGSI

Nucleotide

• Length: 1017 bp

>NTDB_id=852148 QYR59_RS00845 WP_367562492.1 128211..129227(+) (comYB) [Streptococcus iniae strain P3SAB]
ATGGATATCTCACTGAGCAAGAAATCCAAACAGAGAAAATTATCAGCTAAAAAGCAGTATCAATTAATGCAACTCTTTCA
TAATTTATTTGCAAGTGGTTTTAGCTTATCTGAAATAGTGGCATTTTTAGAAAAAAGTCACTTATTGGAAGCAAAATACC
TTGATAGAATAAAAGAAAACCTCATCAGTGGACGAAGTTTAGCAGAAATGACTAGAAGTTTAGGTTATCCTGACAGTATT
GTAACGCAAATTAGTTTTGCAGATATTCATGGCAATACCAAGGAAAGCTTGTTTAAAATTATGCATTACCTTGATAAAGT
GGCACAAGTCAGGAAAAAAACATTAGAAGTCCTAACTTATCCTCTTATTTTGCTTAGTTTTTTAATAGCCATCATGTTTG
GCTTACGCCATTATCTGCTTCCTCAAATAGAGGAGTCTAATGGGCTTACTCAATTTTTGACTTACTTCCCTTTAGTTTTT
TTGATTTTCTTAATATTGGGATTGCTACTCACATTTTACTTGAGCATTAGGTGGCGAAAACACTCACAATTAAAACAAGT
CAAGCAGTTTAGTCGGATACCTTTTTTAAAAGACTATATTAGCCTATATATAACTGCCTATTTTGCGCGTGAATGGGGAA
GTTTAATGGGACAAGGCCTTGAGTTGAGTTCAATACTAACCGTTATGGCAAAAGAACAATCTCCTCTGGTAAAAGAAATC
GGCCAAGATATGCAGGCCTATTTTTTAGAGGGTGGTACTTTGCATGACAAAGTGTTACAATACCCATTTTTTCAAAAGGA
ATTAAGCTTAATGATTGAATATGGAGATATCAAGGCTAAATTAGGTCAAGAATTAGAAATTTATGCTCAACTAACATGGG
AAAGATTCTTTAGTCGCTTATTTCAAGCGACACAATGGATTCAACCTATTATATTCTTATTTGTTGCACTTATTATTGTG
TGCATTTACGCGCCAATGCTTTTGCCCATGTATCATTCAATTGGAGGTTCTATATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (24-141)

• Type II secretion system (T2SS), protein F (T2SSF) (208-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	51.952	98.521	0.512
comYB	Streptococcus mutans UA159	51.952	98.521	0.512
comGB/cglB	Streptococcus mitis NCTC 12261	48.378	100	0.485
comGB/cglB	Streptococcus mitis SK321	47.904	98.817	0.473
comYB	Streptococcus gordonii str. Challis substr. CH1	47.748	98.521	0.47
comGB/cglB	Streptococcus pneumoniae Rx1	46.108	98.817	0.456
comGB/cglB	Streptococcus pneumoniae D39	46.108	98.817	0.456
comGB/cglB	Streptococcus pneumoniae R6	46.108	98.817	0.456
comGB/cglB	Streptococcus pneumoniae TIGR4	46.108	98.817	0.456
comGB	Lactococcus lactis subsp. cremoris KW2	43.243	98.521	0.426