Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QYR59_RS00875 Genome accession   NZ_CP129326
Coordinates   131021..131977 (+) Length   318 a.a.
NCBI ID   WP_003098815.1    Uniprot ID   -
Organism   Streptococcus iniae strain P3SAB     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126021..136977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR59_RS00835 (QYR59_00835) - 126893..127258 (+) 366 WP_003098799.1 DUF1033 family protein -
  QYR59_RS00840 (QYR59_00840) comYA 127319..128260 (+) 942 WP_367561726.1 competence type IV pilus ATPase ComGA Machinery gene
  QYR59_RS00845 (QYR59_00845) comYB 128211..129227 (+) 1017 WP_367562492.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYR59_RS00850 (QYR59_00850) comGC/cglC 129228..129554 (+) 327 WP_367562310.1 competence type IV pilus major pilin ComGC Machinery gene
  QYR59_RS00855 (QYR59_00855) comGD 129514..129942 (+) 429 WP_003098807.1 competence type IV pilus minor pilin ComGD -
  QYR59_RS00860 (QYR59_00860) comGE 129914..130207 (+) 294 WP_031239176.1 competence type IV pilus minor pilin ComGE -
  QYR59_RS00865 (QYR59_00865) comGF 130236..130616 (+) 381 WP_367562091.1 competence type IV pilus minor pilin ComGF -
  QYR59_RS00870 (QYR59_00870) comGG 130606..130959 (+) 354 WP_003098812.1 competence type IV pilus minor pilin ComGG -
  QYR59_RS00875 (QYR59_00875) comYH 131021..131977 (+) 957 WP_003098815.1 class I SAM-dependent methyltransferase Machinery gene
  QYR59_RS00880 (QYR59_00880) - 132034..133230 (+) 1197 WP_367562311.1 acetate kinase -
  QYR59_RS00885 (QYR59_00885) - 133353..133556 (+) 204 WP_003098819.1 helix-turn-helix transcriptional regulator -
  QYR59_RS00890 (QYR59_00890) - 133569..134021 (+) 453 WP_003098820.1 hypothetical protein -
  QYR59_RS00895 (QYR59_00895) - 134031..134687 (+) 657 WP_367562312.1 type II CAAX endopeptidase family protein -
  QYR59_RS00900 (QYR59_00900) proC 134721..135491 (-) 771 WP_003098824.1 pyrroline-5-carboxylate reductase -
  QYR59_RS00905 (QYR59_00905) pepA 135515..136582 (-) 1068 WP_367562313.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35968.86 Da        Isoelectric Point: 4.5568

>NTDB_id=852150 QYR59_RS00875 WP_003098815.1 131021..131977(+) (comYH) [Streptococcus iniae strain P3SAB]
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=852150 QYR59_RS00875 WP_003098815.1 131021..131977(+) (comYH) [Streptococcus iniae strain P3SAB]
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.192

99.686

0.67
  comYH Streptococcus mutans UA140

66.877

99.686

0.667