Detailed information NTG0085209

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: Pta6605_RS12800
• Genome accession: NZ_AP024464
• Coordinates: 2874664..2875833 (+)
• Length: 389 a.a.
• NCBI ID: WP_005746411.1
• Uniprot ID: -
• Organism: Pseudomonas amygdali pv. tabaci strain 6605
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2869664..2880833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Pta6605_RS12785 (Pta6605_25660)	-	2870101..2872428 (+)	2328	WP_016980730.1	ATP-dependent DNA helicase	-
Pta6605_RS12790 (Pta6605_25670)	pgm	2872544..2874190 (+)	1647	WP_016980729.1	phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)	-
Pta6605_RS12795 (Pta6605_25680)	-	2874265..2874540 (-)	276	WP_002553334.1	peptidylprolyl isomerase	-
Pta6605_RS12800 (Pta6605_25690)	pilU	2874664..2875833 (+)	1170	WP_005746411.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
Pta6605_RS12805 (Pta6605_25700)	-	2875882..2877459 (-)	1578	WP_029240837.1	ABC transporter ATP-binding protein	-
Pta6605_RS12810 (Pta6605_25710)	-	2877461..2878483 (-)	1023	WP_016980727.1	ABC transporter permease	-
Pta6605_RS12815 (Pta6605_25720)	-	2878483..2879547 (-)	1065	WP_016980726.1	microcin C ABC transporter permease YejB	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 42566.73 Da
• Isoelectric Point: 6.0641

>NTDB_id=85209 Pta6605_RS12800 WP_005746411.1 2874664..2875833(+) (pilU) [Pseudomonas amygdali pv. tabaci strain 6605]
MDFPALLKILASQDGSDLYLSTGAPPCAKFNGVLKPLGSETLKPGEVAVIAQGLMDEEQKLEFLRELEMNLAVSLAGIGR
FRINIFMQRNEVSIVARNIKLDIPRFEDLFLPPVLLDVIMEKHGLVLFVGATGSGKSTSLAALIDYRNRNASGHIITIED
PVEFIHRHKKSIVNQREVGVDTRSFRAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRAQLLHDLGNNLKAFVSQRLVRTPDGKRRAAVEVMMGTPTIRDLIQRNELTELKGIMEKSGSLGMQTFDTAL
FNLAVEGAISEEEALKNADSQNNVRLRLKLHSEGGVASLTTPPPAPTGSSTASTAEWGLVDDDAPGPQA

Nucleotide

• Length: 1170 bp

>NTDB_id=85209 Pta6605_RS12800 WP_005746411.1 2874664..2875833(+) (pilU) [Pseudomonas amygdali pv. tabaci strain 6605]
ATGGATTTTCCGGCGCTGTTGAAGATTCTGGCCAGTCAGGACGGATCGGACCTGTATCTTTCCACCGGAGCGCCTCCGTG
CGCCAAGTTCAACGGTGTGCTCAAGCCGCTGGGCAGTGAAACCCTCAAGCCGGGCGAGGTTGCGGTGATCGCCCAAGGGC
TGATGGACGAGGAGCAGAAGCTCGAATTCCTGCGCGAACTGGAGATGAACCTTGCTGTTTCGCTGGCGGGCATCGGCCGG
TTCCGGATCAATATCTTCATGCAGCGTAACGAGGTGTCGATCGTCGCGCGGAATATCAAGCTGGATATTCCGCGTTTCGA
GGACCTGTTCCTGCCGCCCGTACTGCTCGATGTGATCATGGAAAAGCACGGGCTGGTGTTGTTCGTCGGTGCCACCGGTT
CGGGCAAATCGACCTCGCTGGCGGCGCTGATCGATTACCGAAATCGCAACGCCAGCGGCCATATCATCACCATTGAAGAC
CCGGTCGAATTCATCCATCGGCACAAGAAGTCCATCGTCAACCAGCGCGAAGTGGGGGTTGATACCCGAAGCTTCCGCGC
GGCGCTGAAGAACACGTTACGTCAGGCTCCGGATGTGATTCTGATCGGCGAAATTCGTGATCGCGAGACCATGGAGCATG
CGCTGGCGTTTGCCGACACCGGCCACCTGGCGATCTCGACCCTGCATGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATCAACTTCTTCCCGGAAGAGCGTCGTGCGCAGTTGCTGCATGACCTGGGCAATAACCTCAAGGCGTTCGTGTCCCAGCG
GCTGGTTAGAACCCCGGACGGCAAACGTCGCGCAGCGGTTGAAGTGATGATGGGCACGCCGACCATTCGCGACCTGATTC
AGCGCAATGAACTGACCGAACTCAAGGGCATCATGGAGAAATCCGGCAGCCTCGGTATGCAGACCTTCGACACGGCGTTG
TTCAATCTGGCCGTCGAGGGGGCGATCAGCGAGGAGGAGGCGCTGAAGAATGCCGACTCGCAGAACAACGTTCGTCTGCG
CCTCAAACTGCACAGTGAAGGCGGAGTCGCCAGCCTGACGACGCCGCCCCCGGCCCCGACCGGCAGCAGCACGGCAAGTA
CCGCCGAGTGGGGGCTGGTCGATGACGACGCGCCGGGGCCGCAGGCGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (115-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	58.011	93.059	0.54
pilU	Acinetobacter baylyi ADP1	51.541	91.774	0.473
pilU	Vibrio cholerae strain A1552	51.714	89.974	0.465
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.687	98.458	0.391
pilT	Pseudomonas aeruginosa PAK	41.108	88.175	0.362