Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QT958_RS21745 Genome accession   NZ_CP129250
Coordinates   4545332..4545856 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain Eh202_LBHALD     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4540332..4550856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QT958_RS21725 (QT958_21725) aphA 4540656..4541369 (+) 714 WP_022650226.1 acid phosphatase AphA -
  QT958_RS21730 (QT958_21730) - 4541482..4541898 (+) 417 WP_022650227.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QT958_RS21735 (QT958_21735) - 4541901..4542254 (+) 354 WP_003860288.1 MmcQ/YjbR family DNA-binding protein -
  QT958_RS21740 (QT958_21740) uvrA 4542258..4545080 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  QT958_RS21745 (QT958_21745) ssb 4545332..4545856 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QT958_RS21750 (QT958_21750) - 4545918..4546199 (-) 282 WP_003860282.1 YjcB family protein -
  QT958_RS21755 (QT958_21755) - 4546571..4546684 (-) 114 Protein_4263 hypothetical protein -
  QT958_RS21760 (QT958_21760) tuf 4546686..4546823 (+) 138 Protein_4264 elongation factor Tu -
  QT958_RS21765 (QT958_21765) bfd 4547002..4547196 (+) 195 WP_003863268.1 bacterioferritin-associated ferredoxin -
  QT958_RS21770 (QT958_21770) bfr 4547269..4547745 (+) 477 WP_003863270.1 bacterioferritin -
  QT958_RS21775 (QT958_21775) - 4547729..4548202 (-) 474 WP_301002948.1 A24 family peptidase -
  QT958_RS21780 (QT958_21780) rpsJ 4548583..4548894 (+) 312 WP_001181005.1 30S ribosomal protein S10 -
  QT958_RS21785 (QT958_21785) rplC 4548927..4549556 (+) 630 WP_003863274.1 50S ribosomal protein L3 -
  QT958_RS21790 (QT958_21790) rplD 4549567..4550172 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  QT958_RS21795 (QT958_21795) rplW 4550169..4550471 (+) 303 WP_000617546.1 50S ribosomal protein L23 -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=851931 QT958_RS21745 WP_003860284.1 4545332..4545856(+) (ssb) [Enterobacter hormaechei strain Eh202_LBHALD]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=851931 QT958_RS21745 WP_003860284.1 4545332..4545856(+) (ssb) [Enterobacter hormaechei strain Eh202_LBHALD]
ATGGCCAGCAGAGGCGTAAATAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTACATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAATGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTTAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374