Detailed information NTG0851836

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: QX495_RS20480
• Genome accession: NZ_CP129239
• Coordinates: 4585282..4586808 (+)
• Length: 508 a.a.
• NCBI ID: WP_180779396.1
• Uniprot ID: -
• Organism: Pectobacterium aroidearum strain YKX
• Function: require for natural transformation (predicted from homology) Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	4586937..4588112	4585282..4586808	flank	129

Gene organization within MGE regions

Location: 4585282..4588112

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QX495_RS20480 (QX495_20480)	comM	4585282..4586808 (+)	1527	WP_180779396.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
QX495_RS20485 (QX495_20485)	-	4586937..4588112 (+)	1176	WP_181830673.1	IS4 family transposase	-

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55412.99 Da
• Isoelectric Point: 6.8238

>NTDB_id=851836 QX495_RS20480 WP_180779396.1 4585282..4586808(+) (comM) [Pectobacterium aroidearum strain YKX]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDIALAPQSEEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLIARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRK
SIERKHLAEALSYRSMDRLLIQLHRSLE

Nucleotide

• Length: 1527 bp

>NTDB_id=851836 QX495_RS20480 WP_180779396.1 4585282..4586808(+) (comM) [Pectobacterium aroidearum strain YKX]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGCGTACAAGCGCCGGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCCTAACGCTAGTTGGCTTACCAGAAACTACCGTTAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGACCTGCCGATTGCTCTGGCGATTCTGGCGGCATCAGAGCAAATCGATGGGGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAATTAGGCCTGTCTGGCACGCTACGTGGCGTCAATGGCGCAATTCCCGCCGCACTGGAAGCCATAAAATCCGGCC
GCCAGCTAATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGTTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGGGAAGAGGAGCTACTCAGTTGCTCCGATATCGCACTGGCTCCGCAGTCAGAAGA
AGATGCACTCGACCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCTGGCGGTCACA
ATCTGCTATTGCTGGGGCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCTATCAACAGCCTCATCAACATTGATGCCACCATGACGCGCTGGCGTGCCAGACC
GTTCAGAGCGCCTCACCATAGTTCTTCTATGGCCGCACTCGTGGGGGGAGGATCGTTGCCAAAACCCGGAGAAATCTCGC
TTGCTCACAACGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTCTGGATTCTCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGGACGCGCGCCAAAGTGTGCTACCCGGCACGCGTGCAGCTCGTCGCTGCAATGAA
TCCCAGCCCATCAGGCCACTATCAAGGCATCCATAACCGCTTACCCGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACGTCAT
CAGGGAGAAAGCAGCGCAACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGCGAAATAGAACAACACTGTGCGTTAGAAGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTCGGTTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACAATCGCTGACCTCGGCGATCGAAAG
AGCATAGAGAGAAAACATCTTGCCGAAGCACTGAGCTATCGCAGTATGGATCGATTGCTCATCCAGCTCCACAGAAGTCT
TGAATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	64.032	99.606	0.638
comM	Vibrio cholerae strain A1552	64.016	99.016	0.634
comM	Glaesserella parasuis strain SC1401	63.314	99.803	0.632
comM	Vibrio campbellii strain DS40M4	62.846	99.606	0.626
comM	Legionella pneumophila str. Paris	50.699	98.622	0.5
comM	Legionella pneumophila strain ERS1305867	50.699	98.622	0.5
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	47.14	99.803	0.47