Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QX495_RS17715 Genome accession   NZ_CP129239
Coordinates   3970423..3970953 (+) Length   176 a.a.
NCBI ID   WP_180778595.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain YKX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3965423..3975953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QX495_RS17700 (QX495_17700) - 3965532..3966398 (-) 867 WP_180778598.1 hypothetical protein -
  QX495_RS17705 (QX495_17705) - 3966900..3967319 (-) 420 WP_015841647.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QX495_RS17710 (QX495_17710) uvrA 3967336..3970170 (-) 2835 WP_180778596.1 excinuclease ABC subunit UvrA -
  QX495_RS17715 (QX495_17715) ssb 3970423..3970953 (+) 531 WP_180778595.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QX495_RS17720 (QX495_17720) - 3971203..3973029 (+) 1827 WP_300994936.1 amidohydrolase -
  QX495_RS17725 (QX495_17725) - 3973242..3973700 (+) 459 WP_300994938.1 GNAT family N-acetyltransferase -
  QX495_RS17730 (QX495_17730) - 3973963..3974553 (+) 591 WP_181847157.1 hypothetical protein -
  QX495_RS17735 (QX495_17735) - 3974614..3975228 (-) 615 WP_015841653.1 hypothetical protein -
  QX495_RS17740 (QX495_17740) - 3975315..3975746 (-) 432 WP_180778590.1 carboxymuconolactone decarboxylase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18799.79 Da        Isoelectric Point: 5.2456

>NTDB_id=851832 QX495_RS17715 WP_180778595.1 3970423..3970953(+) (ssb) [Pectobacterium aroidearum strain YKX]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQNSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=851832 QX495_RS17715 WP_180778595.1 3970423..3970953(+) (ssb) [Pectobacterium aroidearum strain YKX]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACACTGGCAACTTCCGAATCCTGGCGTGATAAACAGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCTGAAGTCGCGGGCGAATATCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGACAGCAGCAAGGCGGTTGGGGAC
AACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCAGCCCAAAACAGCGCTCCA
GCGCAAAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.773
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.608
  ssb Neisseria meningitidis MC58

46.893

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.893

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369