Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QWV57_RS17690 Genome accession   NZ_CP129217
Coordinates   3515024..3515518 (-) Length   164 a.a.
NCBI ID   WP_015376126.1    Uniprot ID   A0A1V9C2L1
Organism   Geobacillus zalihae strain JS1-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3510024..3520518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWV57_RS17670 (QWV57_17670) rplI 3511158..3511607 (-) 450 WP_020754217.1 50S ribosomal protein L9 -
  QWV57_RS17675 (QWV57_17675) - 3511604..3513580 (-) 1977 WP_020754218.1 DHH family phosphoesterase -
  QWV57_RS17680 (QWV57_17680) - 3513627..3514553 (-) 927 WP_011232943.1 YybS family protein -
  QWV57_RS17685 (QWV57_17685) rpsR 3514690..3514926 (-) 237 WP_008880812.1 30S ribosomal protein S18 -
  QWV57_RS17690 (QWV57_17690) ssbA 3515024..3515518 (-) 495 WP_015376126.1 single-stranded DNA-binding protein Machinery gene
  QWV57_RS17695 (QWV57_17695) rpsF 3515549..3515836 (-) 288 WP_011232945.1 30S ribosomal protein S6 -
  QWV57_RS17700 (QWV57_17700) ychF 3516051..3517151 (-) 1101 WP_013524881.1 redox-regulated ATPase YchF -
  QWV57_RS17705 (QWV57_17705) - 3517391..3519412 (-) 2022 WP_013524882.1 molybdopterin-dependent oxidoreductase -
  QWV57_RS17710 (QWV57_17710) - 3519469..3519666 (-) 198 WP_011232948.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18409.30 Da        Isoelectric Point: 4.7126

>NTDB_id=851637 QWV57_RS17690 WP_015376126.1 3515024..3515518(-) (ssbA) [Geobacillus zalihae strain JS1-2]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGERETDFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADSVQFLEPKGTSEQRGATAGGYYGDPFPFGQDQNHRHPDEKGFGRIDDDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=851637 QWV57_RS17690 WP_015376126.1 3515024..3515518(-) (ssbA) [Geobacillus zalihae strain JS1-2]
ATGATTAACCGCGTCATTTTGGTCGGCAGGTTAACGAGAGATCCGGAGTTGCGTTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTTACGCTCGCGGTCAACCGTCCGTTTACAAATCAGCAGGGCGAGCGGGAAACGGATTTTATTCAATGTGTCGTTT
GGCGCCGCCAGGCGGAAAACGTCGCCAACTTTTTGAAAAAGGGGAGCTTGGCTGGTGTCGATGGCCGACTGCAAACCCGC
AGCTATGAAAATCAAGAAGGTCGGCGCGTGTACGTGACGGAAGTGGTGGCTGATAGCGTCCAATTTCTTGAGCCGAAAGG
AACGAGCGAGCAGCGAGGGGCAACAGCAGGCGGCTACTACGGGGATCCATTCCCATTCGGACAAGATCAGAACCACCGAC
ATCCCGATGAAAAAGGGTTTGGCCGCATCGATGACGATCCTTTCGCCAATGACGGCCAGCCGATCGATATTTCTGATGAT
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9C2L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.707
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Vibrio cholerae strain A1552

35.028

100

0.378
  ssb Glaesserella parasuis strain SC1401

32.432

100

0.366