Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LLUC029_RS11935 Genome accession   NZ_CP129163
Coordinates   2274963..2275151 (-) Length   62 a.a.
NCBI ID   WP_014573336.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC029     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2269963..2280151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC029_RS11900 (LLUC029_11925) - 2270889..2271698 (-) 810 WP_011677177.1 metal ABC transporter permease -
  LLUC029_RS11905 (LLUC029_11930) - 2271691..2272428 (-) 738 WP_011677178.1 metal ABC transporter ATP-binding protein -
  LLUC029_RS11910 (LLUC029_11935) - 2272607..2273449 (-) 843 WP_011677179.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LLUC029_RS11915 (LLUC029_11940) - 2273446..2273883 (-) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  LLUC029_RS11920 (LLUC029_11945) comGG 2273963..2274190 (-) 228 WP_228764408.1 competence protein ComGG Machinery gene
  LLUC029_RS11925 (LLUC029_11950) comGF 2274286..2274732 (-) 447 WP_011836043.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLUC029_RS11930 (LLUC029_11955) comGE 2274695..2274931 (-) 237 WP_014573335.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLUC029_RS11935 (LLUC029_11960) comGD 2274963..2275151 (-) 189 WP_014573336.1 hypothetical protein Machinery gene
  LLUC029_RS11940 (LLUC029_11965) comGC 2275353..2275703 (-) 351 WP_050574187.1 competence type IV pilus major pilin ComGC Machinery gene
  LLUC029_RS11945 (LLUC029_11970) comGB 2275748..2276773 (-) 1026 WP_050595614.1 competence type IV pilus assembly protein ComGB Machinery gene
  LLUC029_RS11950 (LLUC029_11975) comGA 2276673..2277653 (-) 981 WP_032951299.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7336.65 Da        Isoelectric Point: 8.3463

>NTDB_id=851364 LLUC029_RS11935 WP_014573336.1 2274963..2275151(-) (comGD) [Lactococcus cremoris strain UC029]
MIYENKEIDIPKEVEMAEFLIIFDEKGGNSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN

Nucleotide


Download         Length: 189 bp        

>NTDB_id=851364 LLUC029_RS11935 WP_014573336.1 2274963..2275151(-) (comGD) [Lactococcus cremoris strain UC029]
TTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTATATTTGATGAGAAAGG
GGGGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGGGGA
GTGGAAAATATAAAAAGAAAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

93.548

100

0.935
  comYD Streptococcus mutans UA140

43.396

85.484

0.371
  comYD Streptococcus mutans UA159

43.396

85.484

0.371