Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   LLUC029_RS11920 Genome accession   NZ_CP129163
Coordinates   2273963..2274190 (-) Length   75 a.a.
NCBI ID   WP_228764408.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC029     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2269423..2273883 2273963..2274190 flank 80


Gene organization within MGE regions


Location: 2269423..2274190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC029_RS11900 (LLUC029_11925) - 2270889..2271698 (-) 810 WP_011677177.1 metal ABC transporter permease -
  LLUC029_RS11905 (LLUC029_11930) - 2271691..2272428 (-) 738 WP_011677178.1 metal ABC transporter ATP-binding protein -
  LLUC029_RS11910 (LLUC029_11935) - 2272607..2273449 (-) 843 WP_011677179.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LLUC029_RS11915 (LLUC029_11940) - 2273446..2273883 (-) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  LLUC029_RS11920 (LLUC029_11945) comGG 2273963..2274190 (-) 228 WP_228764408.1 competence protein ComGG Machinery gene

Sequence

Protein


Download         Length: 75 a.a.        Molecular weight: 8406.73 Da        Isoelectric Point: 9.0864

>NTDB_id=851361 LLUC029_RS11920 WP_228764408.1 2273963..2274190(-) (comGG) [Lactococcus cremoris strain UC029]
MKIEKERLTAELMVSLALKKDLKTSGQLNFDCGNLTYKLLTDLSADSTSGGQTVSNKTYCFDVRLKDGRIYQIVK

Nucleotide


Download         Length: 228 bp        

>NTDB_id=851361 LLUC029_RS11920 WP_228764408.1 2273963..2274190(-) (comGG) [Lactococcus cremoris strain UC029]
TTGAAAATAGAAAAGGAGCGACTGACAGCCGAATTAATGGTTTCATTGGCTCTTAAAAAGGATTTGAAAACGAGTGGTCA
ACTTAATTTTGATTGTGGAAATTTAACTTACAAATTACTGACAGATCTGTCAGCTGATTCAACTAGCGGTGGTCAAACTG
TTAGTAATAAAACTTATTGTTTTGATGTTCGGCTTAAGGATGGAAGAATTTATCAAATAGTAAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Lactococcus lactis subsp. cremoris KW2

96

100

0.96