Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JUD77_RS08570 Genome accession   NZ_AP024414
Coordinates   1721983..1723512 (+) Length   509 a.a.
NCBI ID   WP_032824634.1    Uniprot ID   A0A0D0H0P9
Organism   Haemophilus influenzae strain TA8730     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1716983..1728512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JUD77_RS08545 (TA8730_16400) oppC 1717329..1718264 (+) 936 WP_005651799.1 oligopeptide ABC transporter permease OppC -
  JUD77_RS08550 (TA8730_16410) - 1718274..1719245 (+) 972 WP_005647625.1 ABC transporter ATP-binding protein -
  JUD77_RS08555 (TA8730_16420) oppF 1719242..1720240 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  JUD77_RS08560 (TA8730_16430) - 1720280..1721146 (-) 867 WP_005667527.1 VirK/YbjX family protein -
  JUD77_RS08565 (TA8730_16440) yihA 1721251..1721868 (+) 618 WP_071163204.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  JUD77_RS08570 (TA8730_16450) comM 1721983..1723512 (+) 1530 WP_032824634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JUD77_RS08575 (TA8730_16460) deoC 1723546..1724217 (-) 672 WP_071163203.1 deoxyribose-phosphate aldolase -
  JUD77_RS08580 (TA8730_16470) - 1724328..1724831 (+) 504 WP_005651783.1 protein disulfide oxidoreductase -
  JUD77_RS08585 (TA8730_16480) rfaD 1724884..1725810 (+) 927 WP_012055407.1 ADP-glyceromanno-heptose 6-epimerase -
  JUD77_RS08590 (TA8730_16490) xylB 1725861..1727339 (-) 1479 WP_071163202.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55890.40 Da        Isoelectric Point: 9.8668

>NTDB_id=85097 JUD77_RS08570 WP_032824634.1 1721983..1723512(+) (comM) [Haemophilus influenzae strain TA8730]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=85097 JUD77_RS08570 WP_032824634.1 1721983..1723512(+) (comM) [Haemophilus influenzae strain TA8730]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCGCCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATTGCTATCGGGATTTTAGCTGCATCGGATCAGCTTGATGCGAGCCGCTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGACAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCGCAAACCCTT
TTAGATGTAGTGCAATTTCTCAACGGTCAGGAAAAATTACCCCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGAAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTACCC
GAAATGACAGATCTAGAAGCGATAGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
GCAACGTCCTTTTCGAGCCCCGCACCATAGTGCATCAATGCCGGCTTTAGTTGGTGGCGGAACGATCCCTAAACCTGGCG
AAATATCCTTAGCAACAAATGGGGTGCTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGC
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCCAATGCAAAAATTCAATTCCCAGCTCGTTTTCAATTAGTGGC
AGCGATGAATCCAAGCCCCACAGGCCATTATACTGGGACACATAACCGCACTTCACCGCAACAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTGCAAAAT
ACGGGCGATCGTGGCGAAACCAGCGCGCAAGTTCGTGAAAAAGTGTTAAAAGTGCGAGAGATTCAAATGGAAAGAGCGGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0H0P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.411

100

0.994
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.075

99.607

0.658
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment