Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLUC320_RS09160 Genome accession   NZ_CP129095
Coordinates   1795785..1797056 (-) Length   423 a.a.
NCBI ID   WP_324187043.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC320     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1790785..1802056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC320_RS09125 (LLUC320_09170) atpF 1791247..1791753 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  LLUC320_RS09130 (LLUC320_09175) atpB 1791768..1792481 (-) 714 WP_015082746.1 F0F1 ATP synthase subunit A -
  LLUC320_RS09135 (LLUC320_09180) - 1792528..1792743 (-) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  LLUC320_RS09140 (LLUC320_09185) - 1792926..1793702 (-) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  LLUC320_RS09145 (LLUC320_09190) - 1793986..1794291 (-) 306 Protein_1782 ComEC/Rec2 family competence protein -
  LLUC320_RS09150 (LLUC320_09195) - 1794312..1795202 (-) 891 WP_281634794.1 IS982-like element IS982B family transposase -
  LLUC320_RS09155 (LLUC320_09200) comEC 1795279..1795788 (-) 510 WP_021165649.1 MBL fold metallo-hydrolase Machinery gene
  LLUC320_RS09160 (LLUC320_09205) comEC 1795785..1797056 (-) 1272 WP_324187043.1 ComEC/Rec2 family competence protein Machinery gene
  LLUC320_RS09165 (LLUC320_09210) comEA 1797184..1797630 (-) 447 WP_228763864.1 helix-hairpin-helix domain-containing protein Machinery gene
  LLUC320_RS09170 (LLUC320_09215) - 1797896..1799257 (-) 1362 WP_081196831.1 ABC transporter permease -
  LLUC320_RS09175 (LLUC320_09220) - 1799254..1800186 (-) 933 WP_014572202.1 ABC transporter ATP-binding protein -
  LLUC320_RS09180 (LLUC320_09225) - 1800292..1800690 (-) 399 WP_011676775.1 hypothetical protein -
  LLUC320_RS09185 (LLUC320_09230) - 1800782..1801366 (-) 585 WP_081196832.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 49018.13 Da        Isoelectric Point: 9.7194

>NTDB_id=850834 LLUC320_RS09160 WP_324187043.1 1795785..1797056(-) (comEC) [Lactococcus cremoris strain UC320]
MIPILIVFAVFFLLINSLSIRDNENQPKNLSKIELIPDTIQVNGDLLSFQGRMNGQKYQVYDTLKSLKEKGFYQNLSQNC
QLSFTGNLEIPETQRNFNGFDDQKYLTSQNIYRQITIQQITNVEIKKNFDLHTLRRKAIVWTQNHFPKPMSDYMTGLLFG
FLSKDFNQMSDIYSSLGIIHLFALSGMQVNFFIDWFRKILLRMGLTRERVNLVQIPFSIFYAFMTGLSVSVLRALFQKNI
RLTSLDNIAVTTLVLMLISPKFLLTTGGQLTLFYAFVISMLNHPFSNLNGLKKVLTESSVLSLCVLPLLIFDFHIFQPLS
ILLTIIFGFLFDFMLLPLLLCCFLISFLGFSLNLNYIFQILEWLVYKVDLPLHYPFVLGKPSSLELIILFVLIGLFVDSF
SHKKRRFFLIGFIFLFFSSLKIQ

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=850834 LLUC320_RS09160 WP_324187043.1 1795785..1797056(-) (comEC) [Lactococcus cremoris strain UC320]
ATGATTCCGATATTAATTGTTTTTGCTGTATTTTTTCTGTTAATCAATAGTCTTAGTATTAGGGATAATGAAAATCAACC
AAAAAATCTCTCAAAAATTGAATTAATTCCAGATACAATCCAAGTCAATGGTGATTTATTGAGTTTTCAGGGGAGAATGA
ATGGACAAAAATATCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGT
CAGTTAAGTTTCACAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAAC
TAGTCAAAATATCTATCGACAGATTACCATCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCATACTT
TAAGGCGAAAGGCAATTGTTTGGACACAAAATCATTTTCCAAAACCGATGAGTGACTATATGACAGGTTTGCTTTTTGGC
TTTTTAAGTAAGGATTTTAATCAGATGAGCGATATTTACAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAGGAAT
GCAAGTAAATTTTTTTATTGATTGGTTTCGTAAAATACTTCTTCGCATGGGACTGACGAGAGAAAGAGTGAATCTTGTTC
AAATTCCATTTTCTATTTTTTATGCTTTTATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAATATT
CGTCTGACTTCTTTGGATAATATCGCAGTTACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGACTGG
TGGTCAGCTTACCTTGTTTTATGCTTTTGTCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAAAAAG
TGCTGACAGAATCATCAGTCCTTTCACTTTGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTCTTTCA
ATATTATTAACAATTATATTTGGTTTTCTTTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATATCATT
TTTGGGATTTTCGCTCAATTTAAATTATATTTTTCAAATTCTAGAATGGCTAGTTTATAAAGTTGATTTACCCTTACATT
ACCCCTTTGTTTTGGGGAAACCTAGTTCACTCGAATTAATTATTCTATTTGTGTTAATTGGTTTATTCGTAGATTCATTT
TCTCATAAAAAAAGGAGATTTTTTTTAATTGGATTTATATTTTTATTTTTTTCATCACTAAAAATCCAATGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(157-397)

Domain of unknown function (DUF4131) (DUF4131)

(56-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

97.122

98.582

0.957
  comEC/celB Streptococcus mitis SK321

46.512

91.489

0.426
  comEC/celB Streptococcus mitis NCTC 12261

45.995

91.489

0.421
  comEC/celB Streptococcus pneumoniae TIGR4

45.995

91.489

0.421
  comEC/celB Streptococcus pneumoniae Rx1

45.22

91.489

0.414
  comEC/celB Streptococcus pneumoniae D39

45.22

91.489

0.414
  comEC/celB Streptococcus pneumoniae R6

45.22

91.489

0.414