Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   LLUC310_RS11740 Genome accession   NZ_CP129094
Coordinates   2150777..2152000 (+) Length   407 a.a.
NCBI ID   WP_282675953.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC310     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2145777..2157000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC310_RS11715 (LLUC310_11790) - 2146892..2147695 (-) 804 WP_282675952.1 phosphatidate cytidylyltransferase -
  LLUC310_RS11720 (LLUC310_11795) - 2147695..2148429 (-) 735 WP_021164970.1 isoprenyl transferase -
  LLUC310_RS11725 (LLUC310_11800) yajC 2148779..2149111 (-) 333 WP_011677192.1 preprotein translocase subunit YajC -
  LLUC310_RS11730 (LLUC310_11805) - 2149206..2149904 (-) 699 Protein_2139 DNA alkylation repair protein -
  LLUC310_RS11735 (LLUC310_11810) rlmH 2149922..2150401 (-) 480 WP_021164969.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LLUC310_RS11740 (LLUC310_11815) htrA 2150777..2152000 (+) 1224 WP_282675953.1 S1C family serine protease Regulator
  LLUC310_RS11745 (LLUC310_11820) - 2152122..2153120 (+) 999 WP_021164967.1 glycosyltransferase family 4 protein -
  LLUC310_RS11750 (LLUC310_11825) - 2153258..2154598 (+) 1341 WP_014573350.1 glycosyltransferase family 4 protein -
  LLUC310_RS11755 (LLUC310_11830) - 2154705..2154929 (+) 225 WP_011677198.1 YkuJ family protein -
  LLUC310_RS11760 (LLUC310_11835) - 2155073..2156077 (+) 1005 WP_021164965.1 hypothetical protein -
  LLUC310_RS11765 (LLUC310_11840) - 2156134..2156886 (-) 753 WP_021164964.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 41601.05 Da        Isoelectric Point: 5.3802

>NTDB_id=850805 LLUC310_RS11740 WP_282675953.1 2150777..2152000(+) (htrA) [Lactococcus cremoris strain UC310]
MAKANIGKLLLTGVVGGAIALGGSAIYQSTTNQLGNANRSNTTSTKVSNVSVNVNTDVTSAIKKVSNSVVSVMNYQKQNS
QSDFSSIFGGNSGSSSANDSLQLSSEGSGVIYKKSGGDAYVVTNYHVIAGNSSLDVLLSGGQKVKATVVGYDEYTDLAVL
KISSDHVKDVATFADSSKLTIGEPAIAVGSPLGSQFANTATEGILSATSRQVTLTQENGQTTSINAIQTDAAINPGNSGG
ALINIEGQVIGITQSKITTTEDGSTSVEGLGFAIPSNDVVNIINKLETDGKISRPALGIRMVDLSQLSTNDSSQLKLPSS
VTGGLVVYSVQAGLPAATAGLKAGDVITKVGDTSVTSSTDLQSALYSHNINDTVKVTYYRDGKSATANVKLSKSTSDLET
NSSSSSN

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=850805 LLUC310_RS11740 WP_282675953.1 2150777..2152000(+) (htrA) [Lactococcus cremoris strain UC310]
ATGGCAAAAGCTAATATAGGAAAATTGCTATTAACCGGTGTTGTGGGTGGAGCTATCGCACTCGGAGGAAGCGCAATTTA
TCAAAGCACTACAAACCAACTAGGAAATGCTAACCGCTCAAATACAACTAGCACAAAGGTTAGTAATGTTTCGGTAAATG
TCAATACCGATGTCACCTCTGCAATTAAAAAAGTTTCAAATTCTGTCGTTTCTGTTATGAATTATCAAAAACAGAATTCA
CAAAGTGATTTTAGTTCAATTTTTGGTGGAAATAGCGGCTCAAGTTCAGCTAATGACAGCTTGCAACTTTCCAGTGAGGG
TTCTGGTGTTATTTATAAAAAATCTGGTGGAGATGCTTACGTGGTCACTAACTATCACGTTATTGCTGGAAATAGTTCCC
TCGATGTTTTACTTTCTGGTGGGCAAAAAGTTAAAGCCACAGTTGTTGGTTATGATGAATACACTGACCTTGCCGTTCTT
AAAATCAGCTCTGACCATGTTAAAGACGTGGCAACTTTCGCTGATTCAAGCAAGTTAACTATTGGTGAACCAGCTATTGC
AGTCGGCTCACCTTTAGGTAGCCAGTTTGCTAATACTGCAACCGAAGGAATTCTGTCTGCAACAAGTCGTCAAGTCACTT
TGACTCAAGAAAATGGTCAAACAACAAGTATCAATGCGATTCAAACGGATGCTGCCATTAACCCGGGTAACTCAGGTGGA
GCCTTGATTAATATTGAAGGTCAAGTGATTGGTATTACTCAAAGTAAAATCACAACGACCGAAGATGGTTCTACCTCTGT
GGAAGGTTTAGGTTTTGCTATCCCATCTAATGATGTGGTAAACATCATTAATAAACTTGAAACTGATGGTAAGATTTCAC
GTCCTGCCTTAGGTATTCGTATGGTTGACCTATCTCAATTATCAACAAATGATAGTTCTCAACTGAAATTACCTAGCAGC
GTAACTGGTGGATTGGTTGTCTACTCTGTTCAAGCGGGTCTTCCTGCTGCCACAGCTGGTCTGAAAGCTGGCGATGTGAT
AACGAAGGTGGGAGATACCTCCGTTACTTCATCAACAGACTTACAAAGTGCTCTTTACTCACACAATATTAATGATACTG
TGAAAGTCACCTACTACCGTGATGGTAAATCAGCCACAGCAAATGTTAAACTCTCTAAATCAACAAGCGATTTAGAAACA
AATAGTTCATCTTCTTCTAATTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(295-391)

Trypsin-like peptidase domain (Trypsin_2)

(107-252)

Peptidase family M50 (Peptidase_M50)

(237-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

55.875

94.103

0.526
  htrA Streptococcus gordonii str. Challis substr. CH1

54.872

95.823

0.526
  htrA Streptococcus pneumoniae Rx1

58.14

84.521

0.491
  htrA Streptococcus pneumoniae D39

58.14

84.521

0.491
  htrA Streptococcus pneumoniae R6

58.14

84.521

0.491
  htrA Streptococcus pneumoniae TIGR4

58.14

84.521

0.491
  htrA Streptococcus mutans UA159

53.117

90.663

0.482