Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LBA42_RS01300 Genome accession   NZ_CP145437
Coordinates   245150..246817 (+) Length   555 a.a.
NCBI ID   WP_000923567.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HAC 39-1996     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 240150..251817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBA42_RS01265 (LBA42_01265) - 240333..240635 (+) 303 WP_000985093.1 bacteriocin immunity protein -
  LBA42_RS01270 (LBA42_01270) udk 240743..241381 (+) 639 WP_001181378.1 uridine kinase -
  LBA42_RS01275 (LBA42_01275) xseA 241509..242849 (+) 1341 WP_224798699.1 exodeoxyribonuclease VII large subunit -
  LBA42_RS01280 (LBA42_01280) - 242827..243039 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  LBA42_RS01285 (LBA42_01285) - 243036..243911 (+) 876 WP_000743845.1 polyprenyl synthetase family protein -
  LBA42_RS01290 (LBA42_01290) - 243904..244719 (+) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  LBA42_RS01295 (LBA42_01295) - 244712..245143 (+) 432 WP_001034415.1 arginine repressor -
  LBA42_RS01300 (LBA42_01300) recN 245150..246817 (+) 1668 WP_000923567.1 DNA repair protein RecN Machinery gene
  LBA42_RS01305 (LBA42_01305) - 246819..247547 (+) 729 WP_000133339.1 metallophosphoesterase family protein -
  LBA42_RS01310 (LBA42_01310) lepA 247626..249449 (+) 1824 WP_001047212.1 translation elongation factor 4 -
  LBA42_RS01315 (LBA42_01315) - 249530..249772 (-) 243 WP_000693369.1 hypothetical protein -
  LBA42_RS01320 (LBA42_01320) - 249951..250427 (+) 477 Protein_261 PTS sugar transporter subunit IIA -
  LBA42_RS01325 (LBA42_01325) - 250465..250767 (+) 303 WP_000590570.1 PTS sugar transporter subunit IIB -
  LBA42_RS01330 (LBA42_01330) - 250775..251577 (+) 803 Protein_263 IS5 family transposase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62804.28 Da        Isoelectric Point: 4.6517

>NTDB_id=850697 LBA42_RS01300 WP_000923567.1 245150..246817(+) (recN) [Streptococcus pneumoniae strain HAC 39-1996]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSEIYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=850697 LBA42_RS01300 WP_000923567.1 245150..246817(+) (recN) [Streptococcus pneumoniae strain HAC 39-1996]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGATCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44