Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QVH39_RS22490 Genome accession   NZ_CP129025
Coordinates   4663947..4665467 (+) Length   506 a.a.
NCBI ID   WP_061716303.1    Uniprot ID   -
Organism   Enterobacter pseudoroggenkampii strain SC1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4658947..4670467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVH39_RS22465 (QVH39_22465) ilvE 4660513..4661442 (-) 930 WP_290095260.1 branched-chain-amino-acid transaminase -
  QVH39_RS22470 (QVH39_22470) ilvM 4661461..4661724 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  QVH39_RS22475 (QVH39_22475) ilvG 4661721..4663367 (-) 1647 WP_061716304.1 acetolactate synthase 2 catalytic subunit -
  QVH39_RS22480 (QVH39_22480) ilvX 4663370..4663420 (-) 51 WP_166792073.1 peptide IlvX -
  QVH39_RS22485 (QVH39_22485) ilvL 4663507..4663605 (-) 99 WP_001311244.1 ilv operon leader peptide -
  QVH39_RS22490 (QVH39_22490) comM 4663947..4665467 (+) 1521 WP_061716303.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QVH39_RS22495 (QVH39_22495) - 4665497..4665835 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  QVH39_RS22500 (QVH39_22500) hdfR 4665954..4666775 (+) 822 WP_024907953.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54920.89 Da        Isoelectric Point: 6.9624

>NTDB_id=850697 QVH39_RS22490 WP_061716303.1 4663947..4665467(+) (comM) [Enterobacter pseudoroggenkampii strain SC1]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQKRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=850697 QVH39_RS22490 WP_061716303.1 4663947..4665467(+) (comM) [Enterobacter pseudoroggenkampii strain SC1]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTACATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGATTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTCCGCAGCGCAATAA
TAAATAGCGGTTATGCCTTCCCCGCGAAGAAGATCACCATCAACCTTGCTCCTGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGGGCGATATCGGGAGCGCTGGAAGCCATACGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCGGGGCATTTA
CAGGAAGTTTGTGCATGGCTGGAAGGGCGACATGAACTGTCCGAGCCGGAGGAGTGTGATGATGTTATAGCGGATGCTCC
AGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGGGGACACAATCTTC
TGTTAATTGGTCCGCCGGGTACGGGTAAAACCATGTTGGCGAGCAGATTGAGTGGGTTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATACAGCCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
ATCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGTGGGTCTATCCCCGGGCCGGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAATTGCCGGAGTTTGAGCGCCGCGTGCTGGATGCACTGCGGGAGCCCATTGAATCC
GGCGAGATACATATCTCACGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCCAG
CCCGACGGGCCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACATTGCGCTATCTCGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCTCTCGAAATCCCGCTTCCCCCACCGGGTCTGCTCAGGCAAACGGGCATCACGGGT
GAAAGCTCAGCAGAGGTACGCGAGCGGGTGATTGCAGCCCAGAAGCGGCAGTACGCTCGTCAGAACAGGCTAAATGCGCG
GCTCGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACGTTGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTATCCATACGTGCGTGGCAGCGTTTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGGTGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTATCGCGCTATCGATCGTTTGCTGCTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.847

99.407

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439