Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QVH39_RS01555 Genome accession   NZ_CP129025
Coordinates   341787..342317 (+) Length   176 a.a.
NCBI ID   WP_024906723.1    Uniprot ID   -
Organism   Enterobacter pseudoroggenkampii strain SC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 336787..347317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVH39_RS01535 (QVH39_01535) aphA 337111..337824 (+) 714 WP_024906720.1 acid phosphatase AphA -
  QVH39_RS01540 (QVH39_01540) - 337938..338354 (+) 417 WP_024906721.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QVH39_RS01545 (QVH39_01545) - 338357..338710 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  QVH39_RS01550 (QVH39_01550) uvrA 338714..341536 (-) 2823 WP_024906722.1 excinuclease ABC subunit UvrA -
  QVH39_RS01555 (QVH39_01555) ssb 341787..342317 (+) 531 WP_024906723.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QVH39_RS01560 (QVH39_01560) - 342379..342660 (-) 282 WP_008503385.1 YjcB family protein -
  QVH39_RS01565 (QVH39_01565) - 343151..344554 (+) 1404 WP_024906724.1 sensor domain-containing diguanylate cyclase -
  QVH39_RS01570 (QVH39_01570) - 344893..346458 (+) 1566 WP_024906725.1 EAL domain-containing protein -
  QVH39_RS01575 (QVH39_01575) soxS 346465..346791 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18782.77 Da        Isoelectric Point: 5.2456

>NTDB_id=850679 QVH39_RS01555 WP_024906723.1 341787..342317(+) (ssb) [Enterobacter pseudoroggenkampii strain SC1]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAAAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=850679 QVH39_RS01555 WP_024906723.1 341787..342317(+) (ssb) [Enterobacter pseudoroggenkampii strain SC1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGTGCAGCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.773
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.067

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364