Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QWH96_RS04105 Genome accession   NZ_CP128987
Coordinates   774424..775290 (+) Length   288 a.a.
NCBI ID   WP_046159387.1    Uniprot ID   A0A9X8XHZ8
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 769424..780290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS04080 (QWH96_04085) atpD 770460..771866 (+) 1407 WP_003057452.1 F0F1 ATP synthase subunit beta -
  QWH96_RS04085 (QWH96_04090) - 771879..772295 (+) 417 WP_003050138.1 F0F1 ATP synthase subunit epsilon -
  QWH96_RS04090 (QWH96_04095) - 772624..772860 (+) 237 WP_277997757.1 DUF1146 family protein -
  QWH96_RS04095 (QWH96_04100) murA 772925..774196 (+) 1272 WP_049520088.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QWH96_RS04100 (QWH96_04105) - 774200..774388 (+) 189 WP_046177788.1 DNA-directed RNA polymerase subunit beta -
  QWH96_RS04105 (QWH96_04110) endA 774424..775290 (+) 867 WP_046159387.1 DNA/RNA non-specific endonuclease Machinery gene
  QWH96_RS04110 (QWH96_04115) pheS 775573..776616 (+) 1044 WP_065359147.1 phenylalanine--tRNA ligase subunit alpha -
  QWH96_RS04115 (QWH96_04120) pheT 776826..779231 (+) 2406 WP_065359148.1 phenylalanine--tRNA ligase subunit beta -
  QWH96_RS04120 (QWH96_04125) - 779342..779719 (+) 378 WP_046177790.1 OsmC family protein -
  QWH96_RS04125 (QWH96_04130) - 779712..780098 (+) 387 WP_046177791.1 DUF1722 domain-containing protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31916.95 Da        Isoelectric Point: 10.1381

>NTDB_id=850184 QWH96_RS04105 WP_046159387.1 774424..775290(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MLTRKKRKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEVYSEVPTEALSASVLTKSIKEQ
LGSNIEWNGAGAYIINRNKTDLNASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=850184 QWH96_RS04105 WP_046159387.1 774424..775290(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGTTAACAAGGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCACCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCTATAGTGAGGTTCCCACAGAAGCCCTATCCGCTTCTGTCTTGACCAAATCCATTAAGGAACAA
TTAGGTTCCAATATTGAATGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAAACGCAAGCGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGAAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGACCACGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTCGGTGGACTGAAAGG
TTTTGATGCATCTACCAGTAATCCTGATAACATTGCTACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGCTTAGTACGTCGTGCATTGGATAAGGGCAAAAGGGTCCGTTATCGTGTTACCTTGCTT
TATGATGGTGATAATCTGTTAGCCAGTGGCAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTTCAAGCAGGGTTGACGGTTGATTATCGAACAGGACAGATTGCCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(121-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5