Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QU579_RS15490 Genome accession   NZ_CP128803
Coordinates   3365203..3366726 (-) Length   507 a.a.
NCBI ID   WP_005481190.1    Uniprot ID   Q87KC0
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3360203..3371726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS15470 (QU579_15710) - 3361484..3362470 (+) 987 WP_020904430.1 serine/threonine protein kinase -
  QU579_RS15475 (QU579_15715) - 3362505..3363107 (+) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  QU579_RS15480 (QU579_15720) - 3363149..3364027 (-) 879 WP_020904428.1 acyltransferase -
  QU579_RS15485 (QU579_15725) - 3364190..3365146 (+) 957 WP_102600927.1 DUF2860 domain-containing protein -
  QU579_RS15490 (QU579_15730) comM 3365203..3366726 (-) 1524 WP_005481190.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QU579_RS15495 (QU579_15735) ilvG 3367191..3368837 (+) 1647 WP_005497439.1 acetolactate synthase 2 catalytic subunit -
  QU579_RS15500 (QU579_15740) ilvM 3368848..3369132 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  QU579_RS15505 (QU579_15745) ilvE 3369145..3370083 (+) 939 WP_015297538.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54992.03 Da        Isoelectric Point: 8.4861

>NTDB_id=849664 QU579_RS15490 WP_005481190.1 3365203..3366726(-) (comM) [Vibrio parahaemolyticus strain NJIFDCVp52]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=849664 QU579_RS15490 WP_005481190.1 3365203..3366726(-) (comM) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCACCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCTCCGGCGGATTTACCTAAAGAAGGCGGTCGT
TTTGATTTGCCTATCGCATTGGGTATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCTCTGTCTGGAGGATTAAGACCTGTCAAAGGCGTGCTTCCAGCCGCGTTGGCTGCAAGTAAAGTAGGAC
GTCATTTGGTGGTACCTCATGTCAATGGCGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTTCTTGGTCCTCCTGGTACAGGAAAAACCATGTTGGCATCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGTGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCACTGGAA
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GGCCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGATAGA
GGTGAACCCACAGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTAAACGC
ACTGCTCGGCAGCCGTGAGATTGAGGCATTTTGCCCATTGCAAAAAAGCGATGCGGAATTTCTCGAAACTGCACTCCATC
GGCTGGGATTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCCCGCACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAACGTTCTCATTTGGCGGAAGCGCTCGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87KC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.28

100

0.943
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442