Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   QU661_RS02590 Genome accession   NZ_CP128647
Coordinates   569089..569823 (+) Length   244 a.a.
NCBI ID   WP_304990207.1    Uniprot ID   -
Organism   Mogibacterium neglectum strain ATCC 700924     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 564089..574823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU661_RS02575 (QU661_02580) - 564349..564822 (+) 474 WP_304990204.1 PAS domain-containing protein -
  QU661_RS08400 - 564881..565039 (+) 159 WP_416388978.1 helix-turn-helix domain-containing protein -
  QU661_RS02580 (QU661_02585) - 565342..567012 (+) 1671 WP_304990205.1 formate--tetrahydrofolate ligase -
  QU661_RS02585 (QU661_02590) - 567140..568930 (+) 1791 WP_304990206.1 aminopeptidase P family N-terminal domain-containing protein -
  QU661_RS02590 (QU661_02595) comE/blpR 569089..569823 (+) 735 WP_304990207.1 response regulator transcription factor Regulator
  QU661_RS02595 (QU661_02600) - 570152..571147 (+) 996 WP_304990208.1 sensor histidine kinase -
  QU661_RS02600 (QU661_02605) - 571355..572026 (+) 672 WP_304990209.1 ABC transporter ATP-binding protein -
  QU661_RS02605 (QU661_02610) - 572031..572744 (+) 714 WP_304990210.1 ABC transporter -
  QU661_RS02610 (QU661_02615) - 572927..573733 (-) 807 WP_304990211.1 MFS transporter -
  QU661_RS02615 (QU661_02620) - 573769..574293 (-) 525 WP_304990212.1 MFS transporter -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 28277.76 Da        Isoelectric Point: 6.4986

>NTDB_id=849468 QU661_RS02590 WP_304990207.1 569089..569823(+) (comE/blpR) [Mogibacterium neglectum strain ATCC 700924]
MINIFILEDEILQQSRIDNAIRELIDKKALKCRIPEIFSNPKQMLEAVTEMGSHQLFFLDIEIKGEGQKGLDIAKEIRSR
DPNATIVFVTTHTEFMPITFKYKVAALDFINKALDEKSFKERVCSAIEYTIDKLGTSLSQDSFVFETAMTRVQVPFNNIL
YFETSPMIHKVILHTKDERMEFYASIADIEKADNRLYRCHRSFIVNPENVIKIDKESKVALFENGEGCLISRMKYRGLLE
KLNH

Nucleotide


Download         Length: 735 bp        

>NTDB_id=849468 QU661_RS02590 WP_304990207.1 569089..569823(+) (comE/blpR) [Mogibacterium neglectum strain ATCC 700924]
ATGATTAATATATTTATTTTAGAAGATGAGATACTGCAGCAATCGCGAATCGACAATGCAATTAGGGAATTAATCGATAA
GAAAGCTCTCAAGTGCAGAATACCAGAAATTTTTAGCAATCCAAAGCAGATGCTAGAGGCTGTTACAGAAATGGGCTCTC
ACCAACTGTTTTTTCTAGATATCGAGATTAAGGGAGAAGGGCAAAAAGGATTGGATATTGCGAAGGAAATACGCAGTAGA
GATCCTAATGCGACAATTGTATTTGTGACAACGCATACAGAGTTTATGCCTATTACGTTCAAATATAAAGTAGCAGCGCT
AGATTTTATCAATAAAGCTCTTGATGAAAAATCATTTAAAGAGCGAGTATGTTCGGCTATCGAGTACACTATTGATAAGC
TTGGAACAAGCTTATCTCAAGACTCATTCGTATTTGAAACAGCAATGACACGCGTACAAGTGCCATTTAATAATATCCTT
TATTTCGAGACCTCTCCAATGATTCACAAGGTTATTTTGCATACTAAGGACGAACGTATGGAATTTTATGCTAGTATCGC
TGATATTGAAAAGGCTGATAACCGTCTTTACCGCTGTCACCGATCATTTATAGTTAATCCTGAAAATGTAATTAAGATAG
ATAAGGAGAGTAAGGTTGCTCTATTTGAAAATGGAGAGGGTTGTCTAATATCAAGGATGAAGTACAGAGGGCTGCTTGAA
AAGCTCAATCATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-123)

LytTr DNA-binding domain (LytTR)

(152-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

50.209

97.951

0.492
  comE/comE1 Streptococcus equinus JB1

44.215

99.18

0.439
  comE/comE2 Streptococcus gordonii strain NCTC7865

38.776

100

0.389
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

38.776

100

0.389
  comE/comE2 Streptococcus equinus JB1

37.19

99.18

0.369