Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QU521_RS23105 Genome accession   NZ_CP128618
Coordinates   4773272..4774792 (+) Length   506 a.a.
NCBI ID   WP_219984351.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain WL374     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4768272..4779792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU521_RS23080 (QU521_23080) ilvE 4769839..4770768 (-) 930 WP_023326297.1 branched-chain-amino-acid transaminase -
  QU521_RS23085 (QU521_23085) ilvM 4770787..4771050 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  QU521_RS23090 (QU521_23090) ilvG 4771047..4772693 (-) 1647 WP_021242826.1 acetolactate synthase 2 catalytic subunit -
  QU521_RS23095 (QU521_23095) ilvX 4772696..4772746 (-) 51 WP_192930497.1 peptide IlvX -
  QU521_RS23100 (QU521_23100) ilvL 4772833..4772931 (-) 99 WP_001311244.1 ilv operon leader peptide -
  QU521_RS23105 (QU521_23105) comM 4773272..4774792 (+) 1521 WP_219984351.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QU521_RS23110 (QU521_23110) - 4774823..4775161 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  QU521_RS23115 (QU521_23115) hdfR 4775280..4776101 (+) 822 WP_021242824.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54880.88 Da        Isoelectric Point: 7.5288

>NTDB_id=849371 QU521_RS23105 WP_219984351.1 4773272..4774792(+) (comM) [Enterobacter roggenkampii strain WL374]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPRPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAKVRGRVIAAQARQYARQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=849371 QU521_RS23105 WP_219984351.1 4773272..4774792(+) (comM) [Enterobacter roggenkampii strain WL374]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCCAAAGAGGGCGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTACTACGACCAGGCTAGGCTCGTACGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCATTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATTCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCCGAAAAGGGGTGTCTTATCGCCGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGCCGACATGAACTGTCCGAGCCGGAGGAGTGCGACGAGGCTATAGCAGATGCGCC
AGAAGATCTCAGTGAGATCATGGGACAGGAGCAAGGTAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTCC
TGCTGATTGGCCCGCCTGGTACAGGTAAAACGATGCTGGCGAGCAGGCTGAGTGGGTTGCTCCCGCCGCTCAATAACCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTCATCAGTTCGGCATCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACGGCAATGGTCGGCGGTGGGTCTATCCCCAGACCGGGTGAGATCTCACTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGTTGCCTGAGTTTGAGCGTCGCGTGCTGGATGCACTGAGAGAACCTATTGAATCT
GGTGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAACTGGTCGCTGCGATGAACCCCAG
CCCGACGGGGCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTTTCCGGCC
CATTCCTCGACCGTTTCGATTTGTCTCTCGAAATCCCCCTTCCGCCGCCGGGCCTGCTCAGGCAGACGGGCATAACGGGT
GAGAGCTCAGCAAAAGTGCGCGGGCGGGTGATCGCTGCCCAGGCACGACAATACGCCCGTCAAAACAGGCTGAATGCTCG
GCTTGATAATGCCGGGATCCGGCAGTTTTGTTCGCTTAACAGTGAAGATGCAGGATGGCTTGAAGAGACGTTGACGCGCT
TTGGGCTGTCTATACGTGCGTGGCAACGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGTTATCGCGCTATCGATCGTTTGCTGCTGCACCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

59.046

99.407

0.587
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439