Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G18_RS06835 Genome accession   NZ_CP145045
Coordinates   1319322..1319930 (-) Length   202 a.a.
NCBI ID   WP_047921003.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_L_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314322..1324930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G18_RS06805 (V5G18_06820) yaaA 1314949..1315728 (-) 780 WP_003687925.1 peroxide stress protein YaaA -
  V5G18_RS06810 (V5G18_06825) dapC 1315884..1317071 (-) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5G18_RS06815 (V5G18_06830) dut 1317143..1317595 (-) 453 WP_003702446.1 dUTP diphosphatase -
  V5G18_RS06820 (V5G18_06835) - 1317761..1318472 (+) 712 Protein_1327 AzlC family ABC transporter permease -
  V5G18_RS06825 (V5G18_06840) - 1318469..1318777 (+) 309 WP_047921007.1 AzlD family protein -
  V5G18_RS06830 (V5G18_06845) pilL 1318847..1319320 (-) 474 WP_172616930.1 PilX family type IV pilin Machinery gene
  V5G18_RS06835 (V5G18_06850) pilK 1319322..1319930 (-) 609 WP_047921003.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G18_RS06840 (V5G18_06855) pilJ 1319909..1320844 (-) 936 WP_047921001.1 PilW family protein Machinery gene
  V5G18_RS06845 (V5G18_06860) pilV/pilI 1320841..1321449 (-) 609 WP_047920999.1 type IV pilus modification protein PilV Regulator
  V5G18_RS06850 (V5G18_06865) pilH 1321481..1322146 (-) 666 WP_047921008.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G18_RS06855 (V5G18_06870) dnaB 1322454..1323860 (-) 1407 WP_047920816.1 replicative DNA helicase -
  V5G18_RS06860 (V5G18_06875) - 1324023..1324604 (+) 582 WP_003698180.1 superoxide dismutase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22012.90 Da        Isoelectric Point: 7.5809

>NTDB_id=849281 V5G18_RS06835 WP_047921003.1 1319322..1319930(-) (pilK) [Neisseria gonorrhoeae strain WHO_L_2024]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNGANEETFDNIVVKGKPTVEAVKRSCPAKSGKNSTDLCIDNQGVEYKKGTASVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=849281 V5G18_RS06835 WP_047921003.1 1319322..1319930(-) (pilK) [Neisseria gonorrhoeae strain WHO_L_2024]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACGTTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGGTGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGACCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGGACGGCAAGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

92.611

100

0.931