Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KI242_RS30555 Genome accession   NZ_AP024342
Coordinates   6710439..6711932 (+) Length   497 a.a.
NCBI ID   WP_011064193.1    Uniprot ID   A0A2C9EVM9
Organism   Pseudomonas sp. Eqa60     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6705439..6716932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI242_RS30525 (PEQA60_60830) - 6705974..6706678 (+) 705 WP_015637455.1 HAD family hydrolase -
  KI242_RS30530 (PEQA60_60840) sutA 6706805..6707128 (-) 324 WP_007926654.1 transcriptional regulator SutA -
  KI242_RS30535 (PEQA60_60850) - 6707231..6707656 (-) 426 WP_011064190.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KI242_RS30540 (PEQA60_60860) - 6707866..6709203 (-) 1338 WP_011064191.1 ammonium transporter -
  KI242_RS30545 (PEQA60_60870) glnK 6709237..6709575 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  KI242_RS30550 (PEQA60_60880) - 6709992..6710252 (+) 261 WP_011064192.1 accessory factor UbiK family protein -
  KI242_RS30555 (PEQA60_60890) comM 6710439..6711932 (+) 1494 WP_011064193.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KI242_RS30560 (PEQA60_60900) - 6711937..6713151 (-) 1215 WP_161466780.1 aldose 1-epimerase family protein -
  KI242_RS30565 (PEQA60_60910) - 6713264..6713842 (-) 579 WP_011064195.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  KI242_RS30570 (PEQA60_60920) - 6713978..6714904 (+) 927 WP_170866332.1 ABC transporter six-transmembrane domain-containing protein -
  KI242_RS30575 (PEQA60_60930) - 6714908..6715876 (-) 969 WP_053160431.1 phosphatidylinositol-specific phospholipase C domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53102.08 Da        Isoelectric Point: 8.0997

>NTDB_id=84897 KI242_RS30555 WP_011064193.1 6710439..6711932(+) (comM) [Pseudomonas sp. Eqa60]
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFNFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALALDNIECLGELALSGAVRPVRGVLPAALAARDAGHTLLVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHAPIAPYVSDGLVQSHFPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIQSVASHKPLRYWPQRPFRQPHHSASGAALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIVIARARDRVQFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPEPQP
GNDSAAAATRVAGARELQRERQGCANAFLDLPGLRRHCKLSTTDERWLEAACERLGLSLRAAHRLLKVARTLADLEQAAR
ISREHLAEALHYRPSAD

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=84897 KI242_RS30555 WP_011064193.1 6710439..6711932(+) (comM) [Pseudomonas sp. Eqa60]
ATGTCCCTGGCAATCATCCACAGCCGTGCCCAGGTCGGCGTCCAGGCTCCGGCTGTCAGTGTTGAAGTGCACCTGGCCAA
CGGCTTGCCGAGCCTGACCCTGGTGGGCCTGCCGGAAGCCGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCC
TCAATGCCGGGTTCAACTTTCCGGCCCGGCGCATCACCCTCAACCTGGCGCCGGCGGACCTGCCCAAGGACGGCGGGCGC
TTCGATCTGGCCATCGCCCTGGGCATCCTTGCCGCCAGCGTGCAGGTACCGGCCCTGGCCCTGGACAACATCGAATGCCT
GGGGGAGCTGGCACTCTCCGGCGCGGTGCGCCCGGTACGCGGCGTACTGCCCGCCGCACTGGCGGCACGCGACGCCGGGC
ATACCCTGCTGGTGCCCCGGGCCAATGCCGAAGAAGCCTGCCTGGCCAGCGGCCTAAAGGTGATCGCTGTGGATCATCTG
CTGGAGGCCGTTGCCCATTTCAACGGCCACGCGCCGATTGCGCCCTATGTCAGCGACGGCCTGGTGCAGAGCCACTTCCC
CTACCCCGATCTCAGCGAAGTGCAAGGCCAGCTCGCCGCCAAGCGCGCCCTGCTGATCGCCGCGGCGGGCGCCCACAACC
TGTTGTTCAGCGGCCCGCCAGGCACCGGCAAGACCCTGTTGGCCAGCCGCTTGCCCGGCCTGCTGCCACCGCTGCAGGAA
GATGAAGCCCTGGAAGTCGCGGCGATCCAGTCGGTGGCCAGCCACAAGCCCCTGCGCTACTGGCCACAGCGGCCGTTTCG
CCAGCCCCACCATTCGGCTTCAGGTGCGGCACTGGTCGGAGGCGGCTCGAAACCCCAGCCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAACTGCCGGAGTTCGACCGCAAGGTCCTGGAAGTGCTGCGCGAGCCCATGGAGTCC
GGGCAGATCGTCATTGCCCGAGCCCGGGACCGGGTGCAGTTCCCGGCACGCTTCCAATTGGTGGCAGCGATGAACCCCTG
CCCCTGTGGATATCTTGGCGAGCCCAGCGGACGCTGCCGTTGCACACCGGAGCAGATCCAGCGCTATCGCAACAAGTTAT
CCGGGCCGCTGCTGGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAAGCCACCGCCCTCAACCCCGAGCCGCAACCG
GGCAATGACAGCGCCGCAGCCGCCACCAGGGTCGCCGGGGCTCGCGAGCTGCAACGCGAGCGCCAGGGCTGCGCCAACGC
CTTTCTCGACCTGCCCGGCCTGCGTCGCCACTGCAAATTATCCACCACCGACGAGCGCTGGCTGGAAGCGGCCTGCGAAC
GCCTGGGCCTGTCGTTGCGGGCCGCTCACCGTTTGCTCAAGGTGGCGCGTACCCTGGCGGACCTGGAACAGGCCGCGCGA
ATCAGCCGCGAGCACCTGGCCGAAGCCCTGCATTACCGGCCCAGCGCCGATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9EVM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.556

99.598

0.553
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Glaesserella parasuis strain SC1401

54.8

100

0.551
  comM Haemophilus influenzae Rd KW20

54.491

100

0.549
  comM Legionella pneumophila str. Paris

50.198

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.198

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.459

Multiple sequence alignment