Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QUE04_RS13385 Genome accession   NZ_AP027206
Coordinates   2787303..2788313 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain JNE082640     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2782303..2793313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE04_RS13355 (JNE082640_25420) nudB 2784027..2784479 (+) 453 WP_001300367.1 dihydroneopterin triphosphate diphosphatase -
  QUE04_RS13360 (JNE082640_25430) yebC 2784508..2785248 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QUE04_RS13365 (JNE082640_25440) ruvC 2785283..2785804 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  QUE04_RS13370 (JNE082640_25450) yebB 2785806..2786408 (-) 603 WP_001024908.1 YebB family permuted papain-like enzyme -
  QUE04_RS13375 yobI 2786479..2786544 (+) 66 WP_072094247.1 stress response small protein YobI -
  QUE04_RS13380 (JNE082640_25460) ruvA 2786683..2787294 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  QUE04_RS13385 (JNE082640_25470) ruvB 2787303..2788313 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QUE04_RS13390 (JNE082640_25480) znuB 2788460..2789245 (-) 786 WP_000571479.1 zinc ABC transporter permease subunit ZnuB -
  QUE04_RS13395 (JNE082640_25490) znuC 2789242..2789997 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  QUE04_RS13400 (JNE082640_25500) znuA 2790076..2791008 (+) 933 WP_001342995.1 zinc ABC transporter substrate-binding protein ZnuA -
  QUE04_RS13405 (JNE082640_25510) mepM 2791024..2792346 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=84872 QUE04_RS13385 WP_000568519.1 2787303..2788313(+) (ruvB) [Escherichia coli strain JNE082640]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=84872 QUE04_RS13385 WP_000568519.1 2787303..2788313(+) (ruvB) [Escherichia coli strain JNE082640]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTCGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATCGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGTTGTTTATTGATGAGATCCACCGTCTTTCGCCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGAGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
GTTATTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTTGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494

Multiple sequence alignment