Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LU688_RS26830 Genome accession   NZ_CP128543
Coordinates   5814775..5816262 (+) Length   495 a.a.
NCBI ID   WP_104444694.1    Uniprot ID   A0A2L0LUW4
Organism   Pseudomonas soli strain NMI4264_15     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5809775..5821262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU688_RS26810 (LU688_26810) - 5810050..5810313 (+) 264 WP_102683536.1 accessory factor UbiK family protein -
  LU688_RS26815 (LU688_26815) - 5810338..5810766 (+) 429 WP_031316465.1 molybdopterin-binding protein -
  LU688_RS26820 (LU688_26820) mgtA 5811568..5814279 (+) 2712 WP_094010910.1 magnesium-translocating P-type ATPase -
  LU688_RS26825 (LU688_26825) - 5814290..5814724 (+) 435 WP_081941301.1 DUF2493 domain-containing protein -
  LU688_RS26830 (LU688_26830) comM 5814775..5816262 (+) 1488 WP_104444694.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LU688_RS26835 (LU688_26835) - 5816439..5816690 (+) 252 WP_094010908.1 DUF2790 domain-containing protein -
  LU688_RS26840 (LU688_26840) - 5816722..5817738 (+) 1017 WP_094010907.1 alpha/beta hydrolase -
  LU688_RS26845 (LU688_26845) - 5817965..5819752 (+) 1788 WP_094010906.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LU688_RS26850 (LU688_26850) - 5819862..5821001 (-) 1140 WP_023629976.1 MFS transporter -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52909.78 Da        Isoelectric Point: 8.1966

>NTDB_id=848647 LU688_RS26830 WP_104444694.1 5814775..5816262(+) (comM) [Pseudomonas soli strain NMI4264_15]
MSLALVHSRAQVGVQAPAVSVETHLANGLPTLTLVGLPETTVKESKDRVRSAIVNSGLDYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVAALDGIECLGELALSGTLRPVQGVLPAALAARDAGRALVVPRENAEEASLANGLVVYAVGSL
RELAAHLNAQPAMSPYVAKGLLLEQRPYPDLSEVQGQIAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIRSVSGQAPLDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDRVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIQRYRNKLSGPLLDRIDLHLTVARESTVLTHQPSG
ETSASVGQRVAEARELQQRRQGCANAFLDLKGLRRHCPLEPVDQAWLEQACERLTLSLRAAHRLLKVARTLADLECAQSI
ARSHLAEALQYRPSA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=848647 LU688_RS26830 WP_104444694.1 5814775..5816262(+) (comM) [Pseudomonas soli strain NMI4264_15]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGGGTGCAGGCTCCGGCTGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCACGCTCACGCTGGTCGGTCTGCCAGAAACCACGGTCAAGGAGAGCAAGGATCGAGTCCGCAGCGCCATCG
TCAACTCTGGCCTGGACTATCCGGCACGGCGCATCACCCAGAGCCTCGCCCCAGCCGACCTGCCCAAGGACGGTGGCCGC
TACGACTTGGCCATCGCGCTGGGTATCCTGGCCGCCAATGGCCAGGTACCGGTTGCCGCCCTCGACGGCATTGAATGCCT
GGGGGAACTGGCGCTGTCGGGTACGCTGCGCCCGGTGCAGGGTGTACTGCCTGCGGCATTGGCGGCGCGAGACGCGGGTC
GGGCGCTGGTAGTACCCAGGGAGAATGCCGAGGAAGCCAGCCTGGCCAACGGCCTGGTGGTGTACGCGGTGGGGAGTCTG
CGAGAACTGGCAGCCCACCTGAATGCTCAACCGGCAATGTCACCCTACGTGGCGAAAGGCCTGTTACTGGAGCAACGCCC
CTACCCGGACCTCAGCGAAGTTCAAGGCCAGATCGCTGCCAAGCGGGCGCTGTTGGTCGCCGCAGCTGGTGCCCACAACC
TGCTGCTCTCCGGCCCGCCGGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCGCCGCTGGACGAG
CGCGAGGCGCTGGAGGTGGCGGCGATCCGCTCGGTCAGTGGCCAAGCACCGCTCGATTGCTGGCCACAGCGGCCGTTTCG
CCATCCCCACCACTCGGCCTCCGGCCCGGCGCTGGTGGGTGGTGGCAGCCGACCGCAACCCGGCGAGATCACCCTGGCGC
ACCATGGCGTGCTGTTCCTCGATGAGCTGCCCGAATTTGAACGACGTGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCT
GGCGAGATCGTGGTAGCTCGGGCCAAGGACCGGGTACGCTTCCCGGCGCGCTTTCAACTGGTGGCAGCCATGAACCCGTG
TCCTTGCGGCTATCTGGGTGACCCGACCGGCCGTTGCCGGTGCAGCAGCGAGCAGATCCAGCGCTACCGCAACAAGTTGT
CCGGCCCCCTGCTCGACCGCATCGACCTGCACCTGACAGTGGCCCGGGAAAGTACCGTGCTGACCCACCAGCCCAGCGGG
GAGACCAGCGCCAGTGTTGGCCAGCGGGTGGCCGAGGCACGGGAGCTGCAACAGCGCCGGCAGGGCTGCGCCAATGCCTT
CCTCGATCTCAAGGGGCTGCGCCGGCATTGCCCGCTGGAGCCGGTCGACCAGGCCTGGCTGGAGCAGGCCTGCGAACGGC
TGACGCTGTCGTTACGGGCAGCACACCGGCTGTTGAAGGTGGCCCGCACCCTGGCGGACCTGGAGTGCGCGCAATCCATT
GCCAGGTCGCACCTGGCGGAGGCGCTGCAGTACCGGCCCAGCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0LUW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.91

100

0.554
  comM Haemophilus influenzae Rd KW20

54.2

100

0.547
  comM Vibrio cholerae strain A1552

54.545

100

0.545
  comM Glaesserella parasuis strain SC1401

53.386

100

0.541
  comM Legionella pneumophila str. Paris

49.194

100

0.493
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.913

100

0.487