Detailed information NTG0084822

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QUE04_RS02315
• Genome accession: NZ_AP027206
• Coordinates: 496293..497318 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain JNE082640
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 491293..502318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUE04_RS02305 (JNE082640_04330)	rpmE	493524..493736 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
QUE04_RS02310 (JNE082640_04340)	priA	493939..496137 (+)	2199	WP_001356138.1	primosomal protein N'	Machinery gene
QUE04_RS02315 (JNE082640_04350)	cytR	496293..497318 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
QUE04_RS02320 (JNE082640_04360)	ftsN	497410..498369 (+)	960	WP_000068834.1	cell division protein FtsN	-
QUE04_RS02325 (JNE082640_04370)	hslV	498462..498992 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
QUE04_RS02330 (JNE082640_04380)	hslU	499002..500333 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
QUE04_RS02335 (JNE082640_04390)	menA	500400..501326 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
QUE04_RS02340 (JNE082640_04400)	rraA	501419..501904 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
QUE04_RS02345 (JNE082640_04410)	zapB	501989..502234 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=84822 QUE04_RS02315 WP_000644904.1 496293..497318(+) (cytR) [Escherichia coli strain JNE082640]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=84822 QUE04_RS02315 WP_000644904.1 496293..497318(+) (cytR) [Escherichia coli strain JNE082640]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628