Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NK8_RS00915 Genome accession   NZ_AP024322
Coordinates   186715..188259 (-) Length   514 a.a.
NCBI ID   WP_213226867.1    Uniprot ID   -
Organism   Caballeronia sp. NK8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 181715..193259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NK8_RS00890 (NK8_01760) - 181746..183656 (+) 1911 WP_225936183.1 ATP-binding protein -
  NK8_RS00895 (NK8_01770) - 183676..185010 (+) 1335 WP_213226866.1 sigma-54 dependent transcriptional regulator -
  NK8_RS00900 (NK8_01780) - 185061..185597 (-) 537 WP_106856947.1 peroxiredoxin -
  NK8_RS00905 - 185647..185895 (-) 249 WP_213228674.1 hypothetical protein -
  NK8_RS00910 (NK8_01790) - 185888..186337 (+) 450 WP_367657777.1 hypothetical protein -
  NK8_RS00915 (NK8_01800) comM 186715..188259 (-) 1545 WP_213226867.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NK8_RS00920 (NK8_01810) - 188355..188624 (-) 270 WP_162064748.1 accessory factor UbiK family protein -
  NK8_RS00925 (NK8_01820) - 189071..189409 (+) 339 WP_014190273.1 P-II family nitrogen regulator -
  NK8_RS00930 (NK8_01830) - 189441..190916 (+) 1476 WP_213226868.1 ammonium transporter -
  NK8_RS00935 (NK8_01840) gshA 191206..192495 (+) 1290 WP_162064750.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54627.72 Da        Isoelectric Point: 7.8793

>NTDB_id=84792 NK8_RS00915 WP_213226867.1 186715..188259(-) (comM) [Caballeronia sp. NK8]
MSLAVVRSRAPAPGRAPEVVVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFDFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPAEALEHREFAGELSLTGALRPMRGAFAMVCGAARHYASMRDADTRIPEIYVPLASAPEAALVP
GIDVFGAADLRALCAHLNGVPDARLRPVHAVPLPTAAAPFADLADVIGHPAARRALEVAAAGGHHLLMVGPPGAGKSMLA
ARLPGLLPPMNDDEALTSAAILSASSIGFTPEQWRRRPFRAPHHSSSAAALVGGRNPPQPGEITLAHLGVLFLDELPEFD
RKVLETLREPLEVGQITISRAAQQADFPAACQLVAAMNPCPCGWRGDPSGRCRCSPDVAARYLRKLSGPLMDRIDIQIEL
PALSPAELSARDARRGESSAVVAARVAAARDVQTRRQGKTNRELDGREADQVCRPDAAGEALLRTSGERFGWSARAYYRV
LKVVRTIADLAGAEMPEAAHVAEAVQYRRVLAAA

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=84792 NK8_RS00915 WP_213226867.1 186715..188259(-) (comM) [Caballeronia sp. NK8]
ATGTCGCTTGCCGTGGTACGCAGCCGCGCGCCCGCTCCTGGGCGCGCGCCCGAAGTCGTCGTCGAAGTTCATCTCGCCAA
CGGGTTGCCGTCGTTCTCGATCGTCGGCCTGCCTGATCTCGAAGTCCGCGAAAGCCGGGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGCTTCGACTTTCCCGTCCGCAGAATCACCGTCAATCTCGCGCCCGCCGATCTGCCGAAGGAATCCGGGCGC
TTCGATCTGCCGATCGCGCTCGGCATACTCGCCGCGAGTGGGCAGATTCCGGCTGAAGCGCTGGAGCATCGCGAGTTCGC
GGGGGAGCTTTCGCTGACCGGCGCGCTGCGCCCGATGCGCGGCGCCTTCGCGATGGTCTGCGGCGCGGCTCGCCATTACG
CATCGATGCGCGATGCAGACACCCGCATTCCGGAAATCTACGTGCCGCTCGCGAGCGCGCCGGAGGCCGCGCTGGTGCCG
GGCATCGACGTGTTCGGCGCGGCGGACCTGCGGGCGCTCTGCGCGCATTTGAACGGCGTGCCCGACGCGCGGCTCCGGCC
TGTGCACGCCGTGCCGCTTCCCACGGCCGCCGCGCCGTTCGCCGATCTCGCCGATGTCATCGGCCATCCCGCCGCGCGGC
GCGCGCTGGAAGTCGCGGCGGCGGGCGGTCATCATCTGCTGATGGTCGGTCCGCCCGGCGCGGGCAAGTCCATGCTCGCC
GCGCGCCTGCCTGGCCTGCTTCCGCCGATGAACGACGACGAAGCTCTCACGTCCGCCGCGATTCTCTCGGCGAGTTCGAT
CGGCTTCACGCCCGAGCAATGGCGGCGCAGGCCGTTTCGCGCGCCGCATCACTCGTCGAGCGCGGCGGCGCTCGTCGGCG
GGCGCAATCCGCCGCAGCCCGGAGAAATTACTCTGGCGCATCTCGGCGTGCTGTTTCTCGACGAACTTCCCGAATTCGAC
CGCAAAGTGCTCGAAACCCTGCGCGAGCCGCTCGAAGTCGGGCAGATCACCATCTCGCGCGCCGCGCAGCAAGCCGACTT
TCCGGCCGCGTGCCAGCTCGTCGCGGCGATGAACCCGTGTCCGTGCGGCTGGCGTGGCGATCCGAGCGGACGCTGCCGCT
GCTCGCCCGATGTCGCCGCGCGCTATCTGCGCAAATTGTCCGGGCCGTTGATGGATCGCATCGACATTCAGATCGAGTTG
CCGGCGCTCTCGCCTGCGGAACTGTCGGCGCGAGACGCGCGGCGCGGCGAGTCGAGCGCCGTGGTCGCGGCGCGCGTCGC
GGCGGCGCGGGACGTTCAGACGCGGCGTCAGGGCAAGACCAATCGCGAGCTGGATGGCCGCGAAGCCGATCAGGTCTGCC
GTCCCGATGCCGCAGGCGAAGCATTGTTGCGCACGTCGGGCGAACGCTTCGGCTGGTCGGCGCGCGCGTACTACCGCGTG
CTGAAAGTCGTGCGGACGATCGCGGATCTCGCCGGCGCCGAGATGCCCGAGGCCGCCCACGTCGCCGAGGCGGTGCAGTA
TCGGCGCGTGCTGGCGGCCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(416-508)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.705

99.027

0.492
  comM Vibrio campbellii strain DS40M4

49.016

98.833

0.484
  comM Glaesserella parasuis strain SC1401

48.538

99.805

0.484
  comM Haemophilus influenzae Rd KW20

48.249

100

0.482
  comM Legionella pneumophila str. Paris

46.304

100

0.463
  comM Legionella pneumophila strain ERS1305867

46.304

100

0.463
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.914

97.471

0.418

Multiple sequence alignment