Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V4939_RS05955 Genome accession   NZ_CP144733
Coordinates   1280454..1281086 (+) Length   210 a.a.
NCBI ID   WP_041807047.1    Uniprot ID   -
Organism   Azotobacter vinelandii DJ     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1275454..1286086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4939_RS05935 (V4939_05935) lolD 1275539..1276237 (+) 699 WP_012700105.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  V4939_RS05940 (V4939_05940) - 1276240..1277484 (+) 1245 WP_012700106.1 lipoprotein-releasing ABC transporter permease subunit -
  V4939_RS05945 (V4939_05945) - 1277509..1278036 (-) 528 WP_012700107.1 DUF2062 domain-containing protein -
  V4939_RS05950 (V4939_05950) comA 1278172..1280382 (+) 2211 WP_156483617.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V4939_RS05955 (V4939_05955) exbB 1280454..1281086 (+) 633 WP_041807047.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V4939_RS05960 (V4939_05960) - 1281083..1281511 (+) 429 WP_012700110.1 biopolymer transporter ExbD -
  V4939_RS05965 (V4939_05965) lpxK 1281511..1282512 (+) 1002 WP_012700111.1 tetraacyldisaccharide 4'-kinase -
  V4939_RS05970 (V4939_05970) - 1282573..1282758 (+) 186 WP_012700112.1 Trm112 family protein -
  V4939_RS05975 (V4939_05975) kdsB 1282755..1283519 (+) 765 WP_012700113.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V4939_RS05980 (V4939_05980) - 1283519..1283983 (+) 465 WP_012700114.1 low molecular weight protein-tyrosine-phosphatase -
  V4939_RS05985 (V4939_05985) murB 1283980..1284999 (+) 1020 WP_012700115.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22749.83 Da        Isoelectric Point: 7.2467

>NTDB_id=847527 V4939_RS05955 WP_041807047.1 1280454..1281086(+) (exbB) [Azotobacter vinelandii DJ]
MWELVKAGGWMMLPIVLCSIVALAIIIERLWSLRPGRVTPPNLLGQVWRWIQDKQLNGDKLKELRAGSPLGQILAAGLAN
SKHGREVMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANASQLAGGISTALITTAA
GLFVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEVLQGDREVDLNGGRA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=847527 V4939_RS05955 WP_041807047.1 1280454..1281086(+) (exbB) [Azotobacter vinelandii DJ]
GTGTGGGAGCTTGTCAAAGCGGGCGGCTGGATGATGCTGCCGATCGTTCTCTGTTCCATCGTCGCCCTCGCCATCATCAT
CGAGCGTCTCTGGAGCCTCCGGCCTGGCCGGGTGACTCCGCCGAATCTGCTCGGACAGGTCTGGCGCTGGATACAGGACA
AGCAACTGAATGGCGACAAGCTCAAGGAACTGCGGGCGGGTTCCCCGCTGGGACAGATCCTCGCGGCGGGGCTGGCCAAT
TCCAAGCATGGCCGGGAGGTCATGAAGGAGTGCATCGAGGAAGCGGCGGCGCGCGTCATCCATGATCTGGAGCGCTACCT
CAATGCGCTCGGTACCATCGCCGGCATCGCCCCCTTGCTCGGTTTGCTCGGCACCGTGCTGGGCATGATCGAGATTTTCA
GCAGTTTCATGGGGTCCGGGATGGCCAATGCCTCGCAGCTCGCCGGCGGTATCTCCACGGCGCTGATCACCACCGCCGCC
GGTCTGTTCGTGGCGATTCCCGCGCTGTTCTTCCATCGTTATCTGCAACGGCGCGTCGATGAACTGGTGGTCGGCATGGA
ACAGGAGGCGATCAAGCTGGTGGAGGTGCTGCAGGGCGATCGCGAGGTCGATCTCAACGGGGGAAGGGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

100

0.852