Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   QSV38_RS08080 Genome accession   NZ_CP128410
Coordinates   1541657..1542373 (+) Length   238 a.a.
NCBI ID   WP_130554705.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536657..1547373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS08055 (QSV38_08055) - 1536727..1537629 (+) 903 WP_274504258.1 SPFH domain-containing protein -
  QSV38_RS08060 (QSV38_08060) - 1537719..1537928 (+) 210 WP_024391394.1 hypothetical protein -
  QSV38_RS08065 (QSV38_08065) - 1538038..1538781 (-) 744 WP_277844374.1 amino acid ABC transporter ATP-binding protein -
  QSV38_RS08070 (QSV38_08070) - 1538774..1540336 (-) 1563 WP_289648123.1 ABC transporter substrate-binding protein/permease -
  QSV38_RS08075 (QSV38_08075) - 1540612..1541451 (+) 840 WP_274504947.1 undecaprenyl-diphosphate phosphatase -
  QSV38_RS08080 (QSV38_08080) mecA 1541657..1542373 (+) 717 WP_130554705.1 adaptor protein MecA Regulator
  QSV38_RS08085 (QSV38_08085) - 1542370..1543554 (+) 1185 WP_289648125.1 MraY family glycosyltransferase -
  QSV38_RS08090 (QSV38_08090) sufC 1543726..1544499 (+) 774 WP_171989104.1 Fe-S cluster assembly ATPase SufC -
  QSV38_RS08095 (QSV38_08095) sufD 1544516..1545778 (+) 1263 WP_217374211.1 Fe-S cluster assembly protein SufD -
  QSV38_RS08100 (QSV38_08100) - 1545783..1547009 (+) 1227 WP_217374210.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27881.56 Da        Isoelectric Point: 4.1340

>NTDB_id=847334 QSV38_RS08080 WP_130554705.1 1541657..1542373(+) (mecA) [Streptococcus parasuis strain 7500]
MKVKQISDSTLKITIQLEDLEERGMEIADFLIPQEKTEEFFYTVLDELDLPMTFRESGMLSFRVTPKPDKVDIFVTKSEM
DQSLNFDEFTDLSELGDVSRMTPDELLKSLERTVRERSTHDSKAVRLLEDAEKEDSDEYQEQYIYYILEFPALIDAVNFV
QTVDYPVEESELYKVEQTYYMTVLINVAERSKQYPEYILSRMLEFTNDTKLTRPFLQEHGILMLGNGAIDELKKVQTV

Nucleotide


Download         Length: 717 bp        

>NTDB_id=847334 QSV38_RS08080 WP_130554705.1 1541657..1542373(+) (mecA) [Streptococcus parasuis strain 7500]
ATGAAAGTAAAACAAATAAGTGATTCGACTCTAAAAATCACTATCCAATTAGAAGATTTAGAGGAGCGCGGGATGGAAAT
TGCGGATTTCCTTATCCCTCAAGAAAAGACGGAAGAGTTTTTTTATACAGTATTGGATGAATTGGATTTGCCAATGACTT
TCCGAGAAAGTGGAATGCTTAGTTTTAGAGTTACTCCAAAACCGGATAAAGTGGATATTTTTGTCACAAAATCTGAAATG
GATCAAAGTTTAAATTTTGATGAATTTACAGATTTATCGGAATTAGGCGATGTATCAAGAATGACTCCAGATGAATTGCT
GAAAAGTTTGGAACGTACAGTTCGTGAACGAAGCACGCATGACTCAAAAGCAGTTCGTCTATTAGAAGATGCTGAAAAAG
AAGATAGTGATGAATACCAAGAACAATATATTTACTATATCTTAGAATTTCCTGCTTTGATTGATGCGGTAAATTTTGTT
CAAACAGTGGATTATCCAGTTGAAGAATCTGAGCTCTACAAGGTGGAACAAACCTATTATATGACAGTATTGATTAATGT
TGCAGAGCGTTCAAAGCAGTATCCGGAGTATATTCTATCTCGCATGCTTGAATTTACAAACGATACCAAATTGACACGAC
CATTTCTTCAAGAGCACGGAATCTTGATGTTGGGAAATGGGGCCATTGATGAGTTGAAAAAGGTGCAAACGGTATGA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Streptococcus pneumoniae Rx1

49.18

100

0.504
  mecA Streptococcus pneumoniae D39

49.18

100

0.504
  mecA Streptococcus pneumoniae R6

49.18

100

0.504
  mecA Streptococcus pneumoniae TIGR4

49.18

100

0.504
  mecA Streptococcus mutans UA159

47.951

100

0.492
  mecA Streptococcus thermophilus LMD-9

45.714

100

0.471
  mecA Streptococcus thermophilus LMG 18311

45.306

100

0.466