Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   QSV38_RS07385 Genome accession   NZ_CP128410
Coordinates   1398249..1398932 (-) Length   227 a.a.
NCBI ID   WP_099390332.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393249..1403932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS07360 (QSV38_07360) - 1393816..1394037 (+) 222 WP_044765113.1 M23 family metallopeptidase -
  QSV38_RS07365 (QSV38_07365) lgt 1394081..1394965 (+) 885 WP_217374298.1 prolipoprotein diacylglyceryl transferase -
  QSV38_RS07370 (QSV38_07370) - 1394968..1395201 (+) 234 WP_024380998.1 amino acid acetyltransferase -
  QSV38_RS07375 (QSV38_07375) - 1395476..1396684 (+) 1209 WP_277837592.1 cytochrome D1 domain-containing protein -
  QSV38_RS07380 (QSV38_07380) - 1396855..1398252 (-) 1398 WP_289647148.1 ATP-binding protein -
  QSV38_RS07385 (QSV38_07385) micA 1398249..1398932 (-) 684 WP_099390332.1 response regulator transcription factor Regulator
  QSV38_RS10515 - 1398968..1399138 (-) 171 WP_354318847.1 multicopper oxidase domain-containing protein -
  QSV38_RS07390 (QSV38_07390) - 1399092..1399325 (-) 234 Protein_1407 multicopper oxidase domain-containing protein -
  QSV38_RS07395 (QSV38_07395) - 1399532..1399741 (+) 210 Protein_1408 hypothetical protein -
  QSV38_RS07400 (QSV38_07400) - 1399895..1401337 (+) 1443 WP_217374295.1 multicopper oxidase domain-containing protein -
  QSV38_RS07405 (QSV38_07405) - 1401418..1402527 (+) 1110 Protein_1410 IS3 family transposase -
  QSV38_RS07410 (QSV38_07410) - 1402924..1403418 (+) 495 WP_217375195.1 DUF536 domain-containing protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25664.71 Da        Isoelectric Point: 4.9111

>NTDB_id=847331 QSV38_RS07385 WP_099390332.1 1398249..1398932(-) (micA) [Streptococcus parasuis strain 7500]
MKILIVDDEASILDIVEAYLSAKGYQVFRALSGNEALTKVDVVQPDLIVLDLMLPGLSGLEVCKKIRDSSTVPIIMLTAK
TAEKDILEGLSLGADDYITKPFSPKELVARVETVLRRVQPEYREEKWSFEEGLLVIYPDRKQVFKQGEEIILTPTEYALL
ALLASHPKRLFSREQLLDAVKGLDFDGTDRVIDTHIKNIRQKIEDDTRNPYFILTAYGMGYRFGGQK

Nucleotide


Download         Length: 684 bp        

>NTDB_id=847331 QSV38_RS07385 WP_099390332.1 1398249..1398932(-) (micA) [Streptococcus parasuis strain 7500]
GTGAAGATTTTAATTGTGGACGACGAAGCAAGCATTCTGGATATCGTGGAAGCCTATTTGAGTGCAAAAGGCTATCAAGT
GTTTCGCGCTTTGAGCGGAAACGAGGCTTTAACAAAGGTTGATGTTGTCCAACCTGACTTGATTGTATTGGATCTCATGC
TGCCTGGTTTATCTGGCCTCGAAGTCTGTAAAAAAATAAGGGACTCCTCCACTGTACCGATTATCATGTTGACTGCGAAA
ACAGCCGAAAAAGATATCTTGGAAGGGTTAAGCCTGGGGGCTGATGACTACATCACAAAACCATTCAGCCCGAAAGAGCT
GGTTGCTCGGGTCGAAACCGTTTTACGCCGTGTCCAACCAGAATACCGAGAAGAAAAGTGGTCTTTCGAAGAAGGTTTGC
TGGTTATCTACCCGGATCGAAAACAAGTATTCAAACAAGGTGAAGAAATCATTTTGACCCCGACCGAGTATGCTTTATTA
GCCCTTCTGGCCTCACATCCAAAGCGCCTATTTTCACGGGAACAGCTGCTGGACGCTGTGAAAGGACTCGATTTTGATGG
AACAGATCGGGTGATCGATACCCACATCAAAAATATCCGTCAAAAAATTGAGGACGACACGCGCAACCCCTACTTCATCT
TAACCGCATATGGAATGGGGTATCGATTTGGTGGTCAAAAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-223)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

48.673

99.559

0.485
  vicR Streptococcus mutans UA159

48.458

100

0.485
  scnR Streptococcus mutans UA159

38.865

100

0.392
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.117

98.238

0.374
  covR Streptococcus salivarius strain HSISS4

37.668

98.238

0.37