Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   QSV38_RS05735 Genome accession   NZ_CP128410
Coordinates   1102851..1104203 (-) Length   450 a.a.
NCBI ID   WP_289646203.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1097851..1109203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS05700 (QSV38_05700) - 1098563..1099222 (+) 660 WP_239604822.1 amino acid ABC transporter permease -
  QSV38_RS05705 (QSV38_05705) - 1099203..1099880 (+) 678 WP_289646196.1 amino acid ABC transporter permease -
  QSV38_RS05710 (QSV38_05710) - 1099885..1100631 (+) 747 WP_289646197.1 amino acid ABC transporter ATP-binding protein -
  QSV38_RS05715 (QSV38_05715) - 1100644..1101513 (+) 870 WP_289646198.1 cysteine ABC transporter substrate-binding protein -
  QSV38_RS05720 (QSV38_05720) - 1101874..1102065 (-) 192 WP_024392851.1 hypothetical protein -
  QSV38_RS05725 (QSV38_05725) - 1102082..1102282 (-) 201 WP_289646201.1 hypothetical protein -
  QSV38_RS05730 (QSV38_05730) - 1102283..1102462 (-) 180 WP_024392853.1 hypothetical protein -
  QSV38_RS05735 (QSV38_05735) comB 1102851..1104203 (-) 1353 WP_289646203.1 bacteriocin secretion accessory protein Regulator
  QSV38_RS05740 (QSV38_05740) comA 1104215..1106368 (-) 2154 WP_024403979.1 peptide cleavage/export ABC transporter ComA Regulator
  QSV38_RS05745 (QSV38_05745) - 1106865..1108133 (-) 1269 WP_289646206.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 50797.48 Da        Isoelectric Point: 4.8814

>NTDB_id=847316 QSV38_RS05735 WP_289646203.1 1102851..1104203(-) (comB) [Streptococcus parasuis strain 7500]
MDHHLLESAEFYNRRYHNAASRVIIPSCILFLFLILFSIVAKKEMTISTRATVEPVQRLAQIHSISNHQILRNHLFENQE
ISVGDLLVEYQSENEQIQEDKIKENIAVLKNQISQLNVLKKSLESGSNQFEKEDQYGYSQMFKDYCNQLETLASTIDQQN
ATIASQNQAAKQSQLELDKVMHQTEKALADYRELKWAIQSDGVIDEENVGYSIYAQYQLAQSEDAVASQESFIAQIDNQI
SQVETQLASYKLQYASAGVQQSYTNSLDSQSASLKAQYLTKVGQEMTLLSSQLRELEATLTVQKQAMGKTKIIADQAGVV
HLNTEVEGSMMIPEGTIIAYVYPVLMEARKMKITAYIPSKDIASISLKDNIQFSIQGKGVKRLALQSNISEIASTAIQTE
AGNFFKVEAETRISTEMAEQLRYGMEGQFVVITGKKTYFQYFIDEFLGKE

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=847316 QSV38_RS05735 WP_289646203.1 1102851..1104203(-) (comB) [Streptococcus parasuis strain 7500]
ATGGACCATCATCTGTTAGAAAGTGCAGAATTTTACAACAGACGTTATCATAATGCTGCCAGTAGAGTGATTATTCCTAG
TTGTATATTGTTTTTGTTTCTCATTCTTTTTTCAATCGTTGCTAAAAAAGAAATGACCATTTCAACAAGAGCAACCGTAG
AACCTGTACAACGATTAGCACAGATTCACTCAATCAGTAATCATCAGATTCTGAGGAATCATTTATTCGAAAATCAAGAG
ATTTCAGTTGGAGATTTATTAGTAGAATATCAATCAGAGAATGAGCAAATCCAAGAAGACAAGATCAAAGAAAACATAGC
TGTTTTGAAAAATCAGATTTCTCAACTCAATGTCTTGAAGAAAAGTTTAGAATCGGGAAGTAATCAATTTGAGAAAGAAG
ATCAATATGGTTATTCTCAAATGTTTAAGGATTATTGCAATCAATTAGAAACATTGGCAAGTACGATTGACCAACAAAAT
GCAACGATTGCATCTCAAAATCAAGCCGCAAAACAATCACAATTGGAATTGGATAAAGTAATGCATCAAACGGAGAAAGC
CTTAGCAGACTATAGAGAATTGAAATGGGCCATTCAGTCTGATGGTGTCATTGATGAGGAGAATGTTGGCTATTCAATCT
ATGCACAGTATCAGTTAGCACAATCAGAGGATGCTGTTGCCAGTCAAGAATCATTCATCGCTCAAATCGATAATCAAATC
AGTCAAGTAGAGACTCAACTGGCCAGTTATAAATTGCAATATGCCAGTGCAGGAGTGCAACAATCGTATACGAATAGCTT
GGATAGTCAGTCGGCATCGTTGAAAGCTCAATATTTAACCAAGGTTGGTCAGGAAATGACCTTGTTGTCTTCTCAATTAA
GAGAACTAGAAGCGACACTTACGGTTCAAAAACAAGCAATGGGTAAGACAAAAATTATTGCTGATCAGGCAGGGGTCGTT
CATTTAAATACAGAAGTTGAGGGCTCAATGATGATTCCAGAAGGAACAATTATTGCATATGTTTATCCAGTTCTAATGGA
AGCTAGGAAAATGAAGATTACAGCATATATTCCTTCGAAAGATATTGCAAGCATCTCATTAAAGGATAATATCCAGTTTT
CAATACAAGGGAAGGGGGTTAAGCGACTAGCACTGCAGTCCAACATATCAGAAATTGCAAGCACTGCCATTCAAACGGAA
GCTGGTAATTTTTTCAAAGTTGAAGCAGAAACCAGAATATCAACAGAAATGGCTGAACAATTGAGGTATGGAATGGAAGG
CCAATTTGTCGTGATTACAGGTAAGAAGACGTATTTTCAATATTTCATAGATGAATTTTTAGGTAAGGAATAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(312-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus gordonii str. Challis substr. CH1

49.666

99.778

0.496
  comB Streptococcus pneumoniae D39

47.111

100

0.471
  comB Streptococcus pneumoniae R6

47.111

100

0.471
  comB Streptococcus pneumoniae Rx1

47.111

100

0.471
  comB Streptococcus pneumoniae TIGR4

46.667

100

0.467
  comB Streptococcus mitis NCTC 12261

45.778

100

0.458
  comB Streptococcus mitis SK321

45.556

100

0.456