Detailed information NTG0847255

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QP609_RS16440
• Genome accession: NZ_CP128404
• Coordinates: 3528224..3529597 (+)
• Length: 457 a.a.
• NCBI ID: WP_014648199.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. 8(2023)
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3523224..3534597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP609_RS16425	sucD	3524079..3524954 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
QP609_RS16430	sucC	3524975..3526144 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
QP609_RS16435	-	3526550..3528163 (+)	1614	WP_014648198.1	ATP-binding protein	-
QP609_RS16440	pilR	3528224..3529597 (+)	1374	WP_014648199.1	sigma-54 dependent transcriptional regulator	Regulator
QP609_RS16445	pilB	3529710..3531440 (-)	1731	WP_014648200.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QP609_RS16450	-	3531665..3532036 (-)	372	WP_229767364.1	pilin	-
QP609_RS16455	pilA	3532165..3532593 (-)	429	WP_053495122.1	pilin	Machinery gene
QP609_RS16460	pilC	3532948..3534207 (+)	1260	WP_053495121.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49641.90 Da
• Isoelectric Point: 6.4421

>NTDB_id=847255 QP609_RS16440 WP_014648199.1 3528224..3529597(+) (pilR) [Stenotrophomonas sp. 8(2023)]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPAPGPAAEQGARLLGDSPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAATEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=847255 QP609_RS16440 WP_014648199.1 3528224..3529597(+) (pilR) [Stenotrophomonas sp. 8(2023)]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACGCTCGGCCGCAT
GGGGCTGCGCATCAGTACGGCAGCCAACCTTGCCGAAGCGCGCGAACTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGACGGCAATGGCATCGAGCTGGTCAGCGAGATCGCGCAGCACTACCCGCGCACGCCAGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGATATCGCCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTGAACAACACTGAGCGCCCTGCACCCGGCCCCGCCG
CCGAACAGGGCGCACGCCTGCTGGGCGATTCGCCGGCCATGGACGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGCCCAGGGCGCCCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCGGCGAGCTGATGGAAAGCGAATTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTCGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAATCAGTGCGCGCGGTGGGCGCGGC
TACCGAGGAGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAACGTGATCGAACTGAGGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCATCGGTACTGGCACGGCTGGCCCGCAGCCATGGCCGCCCGACGCCGTTGCTGGCGCCGTCGGCGCTGGACGC
ACTGGCCCAGTACGCCTTCCCTGGCAACGTGCGCGAATTGGAGAACATCCTGGAACGCGCGCTGGCCCTGGCCGAAGAAG
ACCGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCGCGCACGCCCGGCAGCGCAGCACACGCCGAGGCCGTG
GTGGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCGTACATCGAACAGCTCGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.939	99.781	0.628
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49