Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V4Q78_RS03355 Genome accession   NZ_CP144563
Coordinates   683719..684081 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain AB5075 isolate grey variant     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 678719..689081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q78_RS03340 (V4Q78_03340) - 681213..682331 (-) 1119 WP_001260822.1 efflux RND transporter periplasmic adaptor subunit -
  V4Q78_RS03345 (V4Q78_03345) - 682391..683029 (-) 639 WP_001985941.1 hypothetical protein -
  V4Q78_RS03350 (V4Q78_03350) pilG 683312..683695 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  V4Q78_RS03355 (V4Q78_03355) pilH 683719..684081 (+) 363 WP_000101096.1 response regulator Machinery gene
  V4Q78_RS03360 (V4Q78_03360) - 684142..684678 (+) 537 WP_000729762.1 chemotaxis protein CheW -
  V4Q78_RS03365 (V4Q78_03365) - 684725..686803 (+) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=847255 V4Q78_RS03355 WP_000101096.1 683719..684081(+) (pilH) [Acinetobacter baumannii strain AB5075 isolate grey variant]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=847255 V4Q78_RS03355 WP_000101096.1 683719..684081(+) (pilH) [Acinetobacter baumannii strain AB5075 isolate grey variant]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392