Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QP609_RS16460 Genome accession   NZ_CP128404
Coordinates   3532948..3534207 (+) Length   419 a.a.
NCBI ID   WP_053495121.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 8(2023)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3527948..3539207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP609_RS16440 pilR 3528224..3529597 (+) 1374 WP_014648199.1 sigma-54 dependent transcriptional regulator Regulator
  QP609_RS16445 pilB 3529710..3531440 (-) 1731 WP_014648200.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QP609_RS16450 - 3531665..3532036 (-) 372 WP_229767364.1 pilin -
  QP609_RS16455 pilA 3532165..3532593 (-) 429 WP_053495122.1 pilin Machinery gene
  QP609_RS16460 pilC 3532948..3534207 (+) 1260 WP_053495121.1 type II secretion system F family protein Machinery gene
  QP609_RS16465 - 3534216..3535079 (+) 864 WP_005418626.1 A24 family peptidase -
  QP609_RS16470 coaE 3535091..3535702 (+) 612 WP_053495120.1 dephospho-CoA kinase -
  QP609_RS16475 - 3536678..3536992 (-) 315 WP_258014725.1 hypothetical protein -
  QP609_RS16480 - 3537557..3538201 (-) 645 WP_134967364.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45636.85 Da        Isoelectric Point: 10.2305

>NTDB_id=847258 QP609_RS16460 WP_053495121.1 3532948..3534207(+) (pilC) [Stenotrophomonas sp. 8(2023)]
MSVSRSTIKKQPVARGTTELQPFVWEGTDKRGVKMKGEQAAKNANLLRAELRRQGINPGTVKPKPKPLFGNAGSKISSKD
IAFFSRQMATMMKSGVPIVGALDIIASGHKNPRMKKMVDSVRTDIEGGSSLYEAVSKHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVATYKENIESLKGKIKKALFYPVMVMAVALVVSGILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWL
MLLVLAGAVAGFIAAYKRSPNMRHTMDRLILKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
SVLRMRDDVSVGYPVNMAMKQTALFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVSNAVDALSSLLEPMIMVFIGTIV
GGIVVGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=847258 QP609_RS16460 WP_053495121.1 3532948..3534207(+) (pilC) [Stenotrophomonas sp. 8(2023)]
ATGTCTGTCAGTCGCAGTACGATCAAGAAGCAGCCCGTGGCGCGTGGCACTACGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTAAAGATGAAAGGGGAGCAGGCGGCAAAGAATGCCAATCTGCTGAGGGCCGAACTGCGACGTC
AGGGCATCAATCCTGGCACAGTGAAGCCCAAGCCCAAACCTCTGTTCGGCAATGCCGGCAGCAAGATTTCATCAAAGGAT
ATTGCCTTCTTCAGTCGGCAGATGGCCACCATGATGAAGTCGGGCGTACCTATCGTGGGTGCGTTGGACATCATCGCCAG
CGGCCACAAGAACCCACGCATGAAGAAGATGGTGGATTCGGTCCGTACGGACATTGAGGGCGGCTCTTCTCTATATGAAG
CGGTCAGCAAACATCCTGTGCAGTTCGATGACCTCTACCGGAACCTGGTCCGCGCTGGCGAAGGCGCAGGCGTGCTGGAA
ACAGTGCTGGACACTGTCGCAACCTATAAAGAGAACATCGAGTCCCTTAAGGGCAAGATCAAGAAGGCCTTGTTCTACCC
AGTCATGGTAATGGCGGTGGCACTCGTCGTCAGTGGCATCCTGCTGGTCTGGGTGGTCCCACAGTTCGAGGACGTTTTCA
AAGGGTTCGGTGCAGAACTACCGGCGTTCACCCAGATGATCGTGAACCTGTCGCGGTTCATGGTGTCCTGGTGGTGGTTG
ATGTTGCTAGTGCTGGCGGGCGCGGTTGCTGGCTTCATTGCTGCCTACAAACGCTCGCCTAACATGCGGCACACCATGGA
TAGGCTCATCCTCAAGGTGCCAGTGATCGGCCAGATCATGCATAACAGCTCCATTGCGCGCTTCGCCCGGACGACCGCAG
TGACATTCAAAGCTGGTGTGCCCTTGGTCGAAGCGCTTGGAATCGTTGCAGGTGCCACAGGTAACAAGGTCTATGAGGAA
TCCGTGCTCCGTATGCGCGACGATGTCTCAGTAGGCTATCCAGTCAACATGGCTATGAAACAGACCGCGCTGTTCCCGCA
CATGGTCATCCAGATGACCGGTATCGGTGAAGAGGCCGGTGCACTGGACGCGATGCTGTTCAAGGTTGCGGAGTATTATG
AACAGGAGGTCAGCAATGCGGTCGATGCCTTGAGCAGCCTGCTGGAACCGATGATCATGGTATTCATTGGCACCATCGTC
GGCGGTATTGTTGTCGGCATGTACCTGCCCATCTTCAAACTTGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Legionella pneumophila strain ERS1305867

52.228

96.42

0.504
  pilC Acinetobacter baylyi ADP1

50.493

96.897

0.489
  pilC Acinetobacter baumannii D1279779

49.874

94.749

0.473
  pilG Neisseria gonorrhoeae MS11

43.89

95.704

0.42
  pilG Neisseria meningitidis 44/76-A

43.392

95.704

0.415
  pilC Vibrio cholerae strain A1552

42.118

96.897

0.408
  pilC Vibrio campbellii strain DS40M4

40.547

95.943

0.389
  pilC Thermus thermophilus HB27

38.25

95.465

0.365