Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QQM35_RS07550 Genome accession   NZ_CP128355
Coordinates   1508443..1509324 (+) Length   293 a.a.
NCBI ID   WP_251516502.1    Uniprot ID   -
Organism   Staphylococcus hsinchuensis strain H164     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1495284..1514011 1508443..1509324 within 0


Gene organization within MGE regions


Location: 1495284..1514011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQM35_RS07490 (QQM35_07480) - 1495284..1495472 (+) 189 WP_251516474.1 helix-turn-helix transcriptional regulator -
  QQM35_RS07495 (QQM35_07485) - 1495478..1495981 (+) 504 WP_251516477.1 hypothetical protein -
  QQM35_RS07500 (QQM35_07490) rpsP 1496164..1496430 (+) 267 WP_251516480.1 30S ribosomal protein S16 -
  QQM35_RS07505 (QQM35_07495) rimM 1496645..1497151 (+) 507 WP_251516482.1 ribosome maturation factor RimM -
  QQM35_RS07510 (QQM35_07500) trmD 1497151..1497888 (+) 738 WP_251516485.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QQM35_RS07515 (QQM35_07505) rplS 1497992..1498342 (+) 351 WP_251516488.1 50S ribosomal protein L19 -
  QQM35_RS07520 (QQM35_07510) - 1498771..1501398 (-) 2628 WP_251943068.1 YfhO family protein -
  QQM35_RS07525 (QQM35_07515) - 1501460..1504030 (-) 2571 WP_342610306.1 YfhO family protein -
  QQM35_RS07530 (QQM35_07520) ylqF 1504391..1505251 (+) 861 WP_251516494.1 ribosome biogenesis GTPase YlqF -
  QQM35_RS07535 (QQM35_07525) - 1505266..1506036 (+) 771 WP_342610586.1 ribonuclease HII -
  QQM35_RS07540 (QQM35_07530) sucC 1506138..1507304 (+) 1167 WP_251516498.1 ADP-forming succinate--CoA ligase subunit beta -
  QQM35_RS07545 (QQM35_07535) sucD 1507326..1508231 (+) 906 WP_251516500.1 succinate--CoA ligase subunit alpha -
  QQM35_RS07550 (QQM35_07540) dprA 1508443..1509324 (+) 882 WP_251516502.1 DNA-processing protein DprA Machinery gene
  QQM35_RS07555 (QQM35_07545) topA 1509484..1511550 (+) 2067 WP_251516504.1 type I DNA topoisomerase -
  QQM35_RS07560 (QQM35_07550) trmFO 1511696..1513003 (+) 1308 WP_251516506.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QQM35_RS07565 (QQM35_07555) xerC 1513121..1514011 (+) 891 WP_251516508.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 34087.49 Da        Isoelectric Point: 9.7728

>NTDB_id=846986 QQM35_RS07550 WP_251516502.1 1508443..1509324(+) (dprA) [Staphylococcus hsinchuensis strain H164]
MKTKCLLRLRFAGLTTTRIYQLLSEYPNFLEMSEKRCQYLLSLFLNRIKSKYKEAIHNQFIQCTNEDIEQSLKKWRIHYT
SIYQSTYPTLLREIYHPPLILFYKGNPQLFNEKRTLAIIGSRQATNYTQRALNKLFPSFNMHHFTIISGLAKGADQMAHQ
CALDFSMKTIAVLGFGHLNHYPKETRHLRTHLEKDGLVISEYTPYEKPLKHHFPERNRLISGLSRGVLITESTEKSGTCI
TTQFALDQNRDVYVLPGSLFNPLTKGNLLCAQQGAKIIVKENDILEDFLLRFH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=846986 QQM35_RS07550 WP_251516502.1 1508443..1509324(+) (dprA) [Staphylococcus hsinchuensis strain H164]
ATGAAAACAAAATGTTTACTAAGATTAAGGTTCGCTGGATTAACTACGACACGTATTTATCAACTCCTATCTGAATATCC
CAATTTTCTAGAAATGAGTGAAAAACGTTGTCAGTACTTATTAAGTTTGTTTCTCAATCGAATTAAATCAAAGTATAAGG
AAGCAATACATAATCAATTTATACAATGTACAAATGAAGACATCGAGCAATCATTAAAAAAATGGAGAATCCATTATACT
TCAATTTATCAATCTACATATCCTACTTTATTGCGAGAAATTTATCATCCACCTTTAATTTTATTCTACAAAGGTAATCC
TCAATTATTTAATGAAAAGAGAACGTTAGCAATCATCGGCTCAAGACAGGCAACTAATTATACTCAACGTGCACTCAATA
AGCTATTTCCTTCATTTAATATGCATCATTTCACAATTATATCTGGTTTAGCAAAAGGCGCTGATCAAATGGCGCATCAA
TGTGCTCTCGATTTTAGCATGAAGACGATTGCTGTGTTAGGCTTTGGTCATTTGAACCATTACCCAAAGGAAACACGACA
TTTGAGAACCCACTTAGAAAAAGATGGCTTAGTTATTAGTGAATATACACCATATGAAAAGCCATTAAAACATCACTTTC
CAGAACGTAACCGTCTCATCAGTGGTTTATCAAGAGGCGTATTAATCACAGAATCAACTGAAAAAAGTGGGACATGTATC
ACAACTCAATTTGCATTAGATCAAAATAGAGATGTGTATGTGTTGCCAGGGTCTCTGTTCAATCCATTAACTAAAGGAAA
TTTACTTTGCGCACAACAAGGTGCTAAAATCATCGTTAAAGAAAATGATATTCTAGAAGATTTTTTACTTAGATTTCACT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

49.825

97.27

0.485
  dprA Staphylococcus aureus N315

49.825

97.27

0.485
  dprA Lactococcus lactis subsp. cremoris KW2

39.1

98.635

0.386
  dprA Streptococcus mutans UA159

38.947

97.27

0.379
  dprA/cilB/dalA Streptococcus mitis SK321

37.589

96.246

0.362