Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V3I11_RS07385 Genome accession   NZ_CP144280
Coordinates   1482998..1483519 (+) Length   173 a.a.
NCBI ID   WP_042599573.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P3_EMO     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1477998..1488519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS07380 (V3I11_07380) uvrA 1480014..1482845 (-) 2832 WP_042599572.1 excinuclease ABC subunit UvrA Machinery gene
  V3I11_RS07385 (V3I11_07385) ssb 1482998..1483519 (+) 522 WP_042599573.1 single-stranded DNA-binding protein Machinery gene
  V3I11_RS07390 (V3I11_07390) - 1483704..1484483 (-) 780 WP_005656179.1 energy transducer TonB -
  V3I11_RS07395 (V3I11_07395) exbD 1484493..1484936 (-) 444 WP_005656183.1 TonB system transport protein ExbD -
  V3I11_RS07400 (V3I11_07400) exbB 1484940..1485392 (-) 453 WP_005656185.1 TonB-system energizer ExbB -
  V3I11_RS07405 (V3I11_07405) bcp 1485536..1486003 (-) 468 WP_005656187.1 thioredoxin-dependent thiol peroxidase -
  V3I11_RS07410 (V3I11_07410) dapA 1486105..1487001 (+) 897 WP_042599574.1 4-hydroxy-tetrahydrodipicolinate synthase -
  V3I11_RS07415 (V3I11_07415) bamC 1487113..1487760 (+) 648 WP_042599575.1 outer membrane protein assembly factor BamC -
  V3I11_RS07420 (V3I11_07420) hpf 1487933..1488256 (+) 324 WP_005660635.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19264.11 Da        Isoelectric Point: 5.2646

>NTDB_id=846792 V3I11_RS07385 WP_042599573.1 1482998..1483519(+) (ssb) [Haemophilus influenzae strain P3_EMO]
MAGINKVIIVGHLGNDPEIRTMPNGDAVVNISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGSYGNDMGGAPQSSYQARQTNNGCSYQSSRSAPQSATSQPATPQA
EPPMDGFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=846792 V3I11_RS07385 WP_042599573.1 1482998..1483519(+) (ssb) [Haemophilus influenzae strain P3_EMO]
ATGGCTGGAATTAATAAAGTCATTATTGTTGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGTAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGTTCTCAAGTGTATGTGGAAGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGCTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTAGTTATGGCAATGATATGGGCGGCGCACCACAATCCTCTTACCAAGCTCGTC
AAACTAACAATGGTTGTAGTTATCAATCATCTCGTTCTGCGCCACAATCAGCCACATCACAACCAGCAACACCACAGGCT
GAGCCACCAATGGACGGATTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.13

100

0.682
  ssb Vibrio cholerae strain A1552

55.307

100

0.572
  ssb Neisseria gonorrhoeae MS11

50.562

100

0.52
  ssb Neisseria meningitidis MC58

50

100

0.514