Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QSU95_RS14505 Genome accession   NZ_CP128204
Coordinates   3094566..3095267 (+) Length   233 a.a.
NCBI ID   WP_286211363.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ05     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3089566..3100267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS14485 (QSU95_14485) - 3090001..3090663 (+) 663 WP_004728474.1 hypothetical protein -
  QSU95_RS14490 (QSU95_14490) - 3090719..3093028 (+) 2310 WP_286211361.1 Tex family protein -
  QSU95_RS14495 (QSU95_14495) - 3093110..3093580 (-) 471 WP_004728470.1 hypothetical protein -
  QSU95_RS14500 (QSU95_14500) bioH 3093709..3094479 (-) 771 WP_158141460.1 pimeloyl-ACP methyl ester esterase BioH -
  QSU95_RS14505 (QSU95_14505) comF 3094566..3095267 (+) 702 WP_286211363.1 phosphoribosyltransferase family protein Machinery gene
  QSU95_RS14510 (QSU95_14510) nfuA 3095368..3095955 (+) 588 WP_038152592.1 Fe-S biogenesis protein NfuA -
  QSU95_RS14515 (QSU95_14515) nudE 3096101..3096649 (+) 549 WP_004728462.1 ADP compounds hydrolase NudE -
  QSU95_RS14520 (QSU95_14520) cysQ 3096673..3097500 (+) 828 WP_004728460.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QSU95_RS14525 (QSU95_14525) - 3097544..3098302 (-) 759 WP_055465865.1 type II secretion system protein N -
  QSU95_RS14530 (QSU95_14530) - 3098299..3098808 (-) 510 WP_158165925.1 type II secretion system protein M -
  QSU95_RS14535 (QSU95_14535) gspL 3098818..3100029 (-) 1212 WP_286211366.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26308.62 Da        Isoelectric Point: 8.8163

>NTDB_id=846791 QSU95_RS14505 WP_286211363.1 3094566..3095267(+) (comF) [Vibrio furnissii strain VFBJ05]
MLTNRFQKTMFSWLAPACQLCGLALHAPTKPRLCAACLAWYAPTPRCARCGLPCESATAQCGQCLSTPPPWHQLVCVGDY
RFPLSHSVHQLKYQRQFWQARPLAALLAPRITTPAPLITCVPLHWRRQLRRGFNQSDVLARQLAQHLGCEYDPQLFSRPH
ATVPQHGLDKVQRRRNLNRAFVLNHEPCQQHVAIVDDVVTTGSTVRQLCNLLLEVGVKSLDIYCICRTPEPSD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=846791 QSU95_RS14505 WP_286211363.1 3094566..3095267(+) (comF) [Vibrio furnissii strain VFBJ05]
ATGTTAACCAATCGCTTTCAAAAAACCATGTTTTCCTGGCTGGCGCCCGCCTGCCAACTGTGCGGCTTAGCGCTACACGC
GCCGACCAAACCCAGGCTGTGTGCGGCATGTCTAGCGTGGTATGCCCCCACACCGCGCTGCGCTCGCTGCGGCCTGCCGT
GCGAAAGTGCCACCGCGCAGTGCGGCCAGTGCCTGAGCACACCGCCGCCGTGGCATCAGCTGGTCTGTGTGGGCGATTAC
CGCTTTCCTCTCAGCCACAGCGTGCATCAGCTCAAGTATCAGCGCCAGTTTTGGCAAGCGCGGCCCCTGGCTGCATTGCT
CGCGCCCAGAATCACCACGCCGGCGCCGCTGATCACGTGCGTGCCGTTGCATTGGCGTCGCCAACTGCGGCGCGGCTTCA
ATCAAAGTGATGTGTTGGCACGTCAGCTCGCCCAGCATTTGGGCTGCGAGTATGACCCGCAGCTGTTTTCTCGCCCGCAC
GCCACGGTGCCACAACACGGCTTGGACAAAGTGCAGCGGCGACGCAACCTCAACCGTGCCTTTGTGTTAAACCACGAGCC
GTGCCAGCAACACGTAGCGATTGTCGACGATGTCGTCACCACGGGCAGCACCGTACGGCAATTATGCAATTTACTACTTG
AAGTGGGCGTCAAAAGCCTCGATATTTACTGTATCTGCCGCACTCCTGAACCAAGCGACTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.807

100

0.648
  comF Vibrio campbellii strain DS40M4

48.954

100

0.502