Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   V3I11_RS07380 Genome accession   NZ_CP144280
Coordinates   1480014..1482845 (-) Length   943 a.a.
NCBI ID   WP_042599572.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P3_EMO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1475014..1487845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS07370 (V3I11_07370) - 1475045..1475491 (-) 447 WP_005660622.1 hypothetical protein -
  V3I11_RS07375 (V3I11_07375) hap 1475634..1479695 (-) 4062 WP_042599571.1 adhesion and penetration autotransporter Hap -
  V3I11_RS07380 (V3I11_07380) uvrA 1480014..1482845 (-) 2832 WP_042599572.1 excinuclease ABC subunit UvrA Machinery gene
  V3I11_RS07385 (V3I11_07385) ssb 1482998..1483519 (+) 522 WP_042599573.1 single-stranded DNA-binding protein Machinery gene
  V3I11_RS07390 (V3I11_07390) - 1483704..1484483 (-) 780 WP_005656179.1 energy transducer TonB -
  V3I11_RS07395 (V3I11_07395) exbD 1484493..1484936 (-) 444 WP_005656183.1 TonB system transport protein ExbD -
  V3I11_RS07400 (V3I11_07400) exbB 1484940..1485392 (-) 453 WP_005656185.1 TonB-system energizer ExbB -
  V3I11_RS07405 (V3I11_07405) bcp 1485536..1486003 (-) 468 WP_005656187.1 thioredoxin-dependent thiol peroxidase -
  V3I11_RS07410 (V3I11_07410) dapA 1486105..1487001 (+) 897 WP_042599574.1 4-hydroxy-tetrahydrodipicolinate synthase -
  V3I11_RS07415 (V3I11_07415) bamC 1487113..1487760 (+) 648 WP_042599575.1 outer membrane protein assembly factor BamC -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104359.40 Da        Isoelectric Point: 7.3950

>NTDB_id=846791 V3I11_RS07380 WP_042599572.1 1480014..1482845(-) (uvrA) [Haemophilus influenzae strain P3_EMO]
MENIDIRGARTHNLKNINLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDSIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPDHNVPLTAQTISQMVDKVLSLPEDSKMMLLAPVVKNRKG
EHLKILENIAAQGYIRARIDGEICDLSDPPKLALQKKHTIEVVVDRFKVRSDLATRLAESFETALELSGGTAIVAEMDNP
KAEELIFSANFACPRCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEDRVVQNPTISLAGGAVKGWDRRNFYYYQM
LTSLAKHYHFDVEAPYESLPKKIQHIIMHGSGKEEIEFQYMNDRGDVVIRKHPFEGILNNMARRYKETESMSVREELAKN
ISNRPCIDCGGSRLRPEARNVYIGKTNLPIIAEKSIGETLEFFTALSLTGQKAQIAEKILKEIRERLQFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLCNLGNTVIVVEHDEDAIRAADHIIDI
GPGAGVHGGQVIAQGNADEIMLNPNSITGKFLSGADKIEIPKKRTALDKKKWLKLKGASGNNLKNVNLDIPVGLFTCVTG
VSGSGKSTLINDTLFPLAQNALNRAEKTDYAPYQSIEGLEHFDKVIDINQSPIGRTPRSNPATYTGLFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVLKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEEAREFF
DAIPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLEVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIATGTPEQVAKVKSSHTARFLKPILEKP

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=846791 V3I11_RS07380 WP_042599572.1 1480014..1482845(-) (uvrA) [Haemophilus influenzae strain P3_EMO]
ATGGAAAATATCGATATTCGCGGGGCTAGAACCCATAACCTGAAAAATATTAATTTAACCATTCCACGCAATAAACTTGT
GGTAATCACAGGGCTTTCAGGTTCGGGGAAATCCTCTTTAGCCTTTGATACGCTTTATGCGGAAGGGCAACGCCGTTATG
TTGAATCACTTTCTGCTTATGCCCGTCAGTTTTTATCTTTAATGGAAAAGCCTGATGTGGATTCTATTGAGGGGCTTTCG
CCTGCAATTTCCATTGAACAAAAATCTACTTCACACAATCCACGTTCTACAGTGGGAACAATTACAGAAATTTACGATTA
TTTACGTTTATTGTTTGCCCGTGTAGGGGAGCCGCGTTGTCCCGATCATAACGTTCCATTAACAGCACAAACGATTAGTC
AAATGGTGGACAAAGTATTAAGTTTGCCAGAAGACAGCAAAATGATGTTACTTGCGCCAGTGGTCAAAAATCGCAAAGGC
GAACATCTCAAGATTTTAGAAAATATTGCTGCACAAGGTTACATTCGGGCGCGTATTGATGGCGAAATTTGCGATTTATC
TGATCCGCCAAAATTAGCTTTACAGAAAAAACATACAATTGAAGTGGTGGTGGATCGCTTTAAAGTGCGGTCAGATTTAG
CAACACGTTTAGCCGAATCTTTTGAAACCGCATTAGAGCTTTCAGGTGGCACCGCAATTGTGGCAGAAATGGATAATCCG
AAAGCGGAAGAATTAATTTTTTCGGCAAATTTTGCTTGTCCGCGTTGTGGTTATTCTGTGCCAGAATTAGAGCCTCGTTT
GTTTTCCTTTAACAATCCTGCAGGTGCTTGCCCGACCTGTGATGGCTTAGGTGTGCAGCAATATTTTGATGAAGATCGTG
TGGTGCAAAATCCAACGATTTCCCTTGCAGGCGGTGCAGTGAAAGGTTGGGATCGTCGTAATTTCTATTATTATCAAATG
CTTACATCATTGGCGAAACATTATCATTTTGATGTTGAAGCCCCTTATGAATCTTTGCCAAAGAAAATTCAACATATCAT
TATGCATGGCTCAGGCAAAGAGGAAATTGAATTCCAATATATGAATGATCGTGGCGATGTGGTTATTCGCAAGCACCCTT
TTGAAGGGATTTTGAATAATATGGCTCGCCGATATAAAGAAACAGAATCAATGTCGGTGCGCGAAGAATTAGCAAAAAAT
ATTAGCAATCGACCTTGTATAGATTGTGGTGGATCTCGTTTGAGACCCGAAGCGCGTAATGTGTATATTGGAAAAACCAA
TTTGCCGATAATTGCGGAAAAAAGCATTGGCGAAACCCTCGAATTTTTTACCGCACTTTCTCTCACTGGTCAAAAAGCGC
AAATTGCGGAAAAAATTCTTAAAGAAATCCGCGAGCGCTTGCAGTTTTTAGTCAATGTTGGTTTGAATTATCTTTCTCTT
TCTCGTTCTGCTGAAACTCTTTCAGGTGGGGAGGCGCAACGTATTCGCCTTGCGAGTCAAATTGGTGCGGGACTTGTTGG
CGTAATGTATGTATTAGATGAACCCTCTATTGGCTTGCACCAACGTGATAATGAACGCTTACTTAATACGTTAATTCATT
TGTGTAATCTTGGTAATACGGTAATTGTCGTGGAACACGATGAAGACGCGATTCGTGCAGCTGACCATATTATTGATATT
GGGCCTGGTGCTGGCGTGCATGGCGGACAAGTTATTGCACAAGGAAATGCCGATGAAATTATGCTGAATCCAAATTCCAT
CACAGGAAAATTTTTATCGGGTGCAGATAAAATCGAAATCCCGAAAAAACGCACCGCACTTGATAAGAAAAAATGGCTCA
AACTTAAAGGTGCATCAGGTAATAACTTAAAAAATGTGAATTTAGATATTCCCGTTGGTTTGTTTACTTGCGTAACTGGT
GTGTCTGGTTCAGGAAAATCCACACTTATTAATGACACCTTATTTCCACTTGCGCAAAATGCGTTAAATAGAGCTGAAAA
AACCGATTACGCACCTTATCAATCTATTGAGGGATTAGAACATTTCGATAAAGTTATTGATATTAACCAAAGCCCAATTG
GACGTACGCCACGTTCAAATCCAGCCACTTATACAGGCTTATTTACCCCAATTCGCGAGCTTTTTGCAGGTGTGCCAGAG
GCACGTGCGCGCGGTTATAATCCTGGGCGTTTTAGCTTTAACGTACGGGGTGGACGCTGTGAAGCCTGTCAGGGCGATGG
TGTACTCAAAGTTGAAATGCACTTTTTGCCCGATGTTTATGTTCCTTGCGACCAATGTAAAGGTAAACGCTATAATCGCG
AAACCTTAGAAATTCGTTACAAAGGCAAAACCATCCATCAGGTGTTAGATATGACAGTGGAAGAAGCTCGCGAGTTTTTT
GATGCGATTCCAATGATTGCAAGAAAATTACAAACCTTGATGGATGTGGGATTATCCTATATTCGATTAGGTCAATCTTC
CACAACACTTTCAGGCGGCGAAGCACAACGCGTTAAGCTAGCGACCGAGCTTTCTAAACGTGATACGGGTAAAACTTTGT
ATATTCTAGATGAACCGACGACTGGTTTGCATTTCGCTGACATTAAGCAATTACTTGAAGTACTGCATCGATTACGCGAC
CAAGGAAATACTATAGTCGTCATTGAACACAATCTTGATGTGATTAAAACCGCAGACTGGATTGTCGATCTTGGCCCAGA
GGGAGGCAGTGGCGGCGGACAAATTATTGCGACGGGTACACCAGAACAAGTTGCTAAAGTAAAAAGTTCCCACACCGCTC
GCTTCCTTAAACCGATTTTAGAAAAACCTTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.915

99.682

0.567
  uvrA Streptococcus pneumoniae TIGR4

56.915

99.682

0.567
  uvrA Streptococcus pneumoniae D39

56.915

99.682

0.567