Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QSU96_RS13385 Genome accession   NZ_CP128200
Coordinates   2874292..2875161 (+) Length   289 a.a.
NCBI ID   WP_004729087.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2869292..2880161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS13365 (QSU96_13365) nadC 2869656..2870543 (+) 888 WP_154180385.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QSU96_RS13370 (QSU96_13370) - 2870791..2871240 (+) 450 WP_055466517.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QSU96_RS13375 (QSU96_13375) pilB 2871247..2872935 (+) 1689 WP_238773636.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QSU96_RS13380 (QSU96_13380) pilC 2873014..2874240 (+) 1227 WP_004729085.1 type II secretion system F family protein Machinery gene
  QSU96_RS13385 (QSU96_13385) pilD 2874292..2875161 (+) 870 WP_004729087.1 A24 family peptidase Machinery gene
  QSU96_RS13390 (QSU96_13390) coaE 2875164..2875772 (+) 609 WP_143680340.1 dephospho-CoA kinase -
  QSU96_RS13395 (QSU96_13395) zapD 2875805..2876545 (+) 741 WP_004729090.1 cell division protein ZapD -
  QSU96_RS13400 (QSU96_13400) yacG 2876603..2876800 (+) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  QSU96_RS13405 (QSU96_13405) parC 2876880..2879153 (-) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32204.28 Da        Isoelectric Point: 6.9289

>NTDB_id=846734 QSU96_RS13385 WP_004729087.1 2874292..2875161(+) (pilD) [Vibrio furnissii strain VFBJ07]
MDIFTFYPWLFPTLATLLGLIIGSFLNVVIYRLPKIMEREWRQDCAESFPEYHIEPPQGVLTLSTPRSTCPHCDTPIRII
DNIPVLSWLLLRGKCSQCHAPISARYPLIESFTALCSLAIALQFGFSWFAVALLFFSYVLIAATFIDFDTMLLPDQLTLP
LMWGGIALALAGISPITLHDAVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILMSSVVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSALYGQAIVGWYFHSVLGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=846734 QSU96_RS13385 WP_004729087.1 2874292..2875161(+) (pilD) [Vibrio furnissii strain VFBJ07]
ATGGACATTTTTACTTTCTATCCCTGGCTGTTTCCCACGCTGGCCACCTTGCTGGGTCTGATCATCGGCAGTTTTCTCAA
TGTGGTGATCTATCGCTTGCCGAAAATCATGGAGCGCGAGTGGCGTCAAGACTGTGCCGAGTCCTTTCCGGAATACCACA
TTGAACCGCCCCAAGGTGTGTTAACACTCAGCACGCCCCGTTCCACCTGCCCACATTGCGATACACCGATTCGTATCATC
GACAATATTCCGGTGCTGAGCTGGCTGCTACTGCGCGGCAAGTGCTCGCAGTGCCACGCACCCATTAGCGCTCGCTACCC
ACTGATTGAATCGTTTACGGCGTTATGCAGCTTGGCGATTGCTTTGCAGTTTGGTTTTAGCTGGTTTGCGGTGGCTTTGC
TGTTTTTCAGTTATGTACTGATTGCGGCAACCTTCATCGACTTCGACACCATGCTGCTGCCTGACCAACTGACGCTACCG
TTGATGTGGGGCGGTATTGCACTCGCGCTAGCGGGCATCAGCCCAATCACGTTGCACGATGCCGTGATCGGTGCGATGGC
GGGGTATCTGGCGCTGTGGTCCGTCTACTGGCTGTTTAAACTGCTCACCGGCAAGGAAGGCATGGGGTACGGAGACTTTA
AGTTGTTGGCCGCACTGGGCGCTTGGCTCGGATGGCAGCAGCTGCCGATCATCATTTTGATGTCTTCAGTGGTTGGCCTC
GTGTTTGGTCTGATTCAACTGCGCCTGCAAAAACGCGGCATCGATAAAGCCTTCCCGTTTGGCCCTTATCTGGCGATTGC
GGGTTGGCTGTCAGCGCTATACGGTCAGGCGATCGTTGGCTGGTATTTTCACTCCGTATTAGGATTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

79.167

99.654

0.789
  pilD Vibrio campbellii strain DS40M4

77.083

99.654

0.768
  pilD Acinetobacter nosocomialis M2

52.574

94.118

0.495
  pilD Acinetobacter baumannii D1279779

51.812

95.502

0.495
  pilD Neisseria gonorrhoeae MS11

47.584

93.08

0.443