Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QSU96_RS14335 Genome accession   NZ_CP128200
Coordinates   3060479..3061111 (+) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio furnissii strain VFBJ07     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3055479..3066111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS14315 (QSU96_14315) - 3057396..3057869 (+) 474 WP_004728586.1 TIGR02444 family protein -
  QSU96_RS14320 (QSU96_14320) - 3057997..3058974 (+) 978 WP_004728585.1 hydrolase -
  QSU96_RS14325 (QSU96_14325) - 3059063..3059272 (+) 210 WP_004728584.1 YheU family protein -
  QSU96_RS14330 (QSU96_14330) - 3059367..3060236 (+) 870 WP_004728583.1 phosphoribulokinase -
  QSU96_RS14335 (QSU96_14335) crp 3060479..3061111 (+) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  QSU96_RS14340 (QSU96_14340) - 3061194..3061988 (-) 795 WP_143680281.1 DUF1338 domain-containing protein -
  QSU96_RS14345 (QSU96_14345) astD 3062174..3063631 (-) 1458 WP_286279658.1 succinylglutamate-semialdehyde dehydrogenase -
  QSU96_RS14350 (QSU96_14350) astA 3063665..3064684 (-) 1020 WP_286279659.1 arginine N-succinyltransferase -
  QSU96_RS14355 (QSU96_14355) - 3064784..3065995 (-) 1212 WP_055465829.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=846735 QSU96_RS14335 WP_004728582.1 3060479..3061111(+) (crp) [Vibrio furnissii strain VFBJ07]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=846735 QSU96_RS14335 WP_004728582.1 3060479..3061111(+) (crp) [Vibrio furnissii strain VFBJ07]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCACGCGGGCGAGAAAGCAGAAACGTTGTACTACATCGTCAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTCAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCGGAAATTTCATTTAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTGATGCGCCTGTCTGGTCAGATGGCTCGCCGTCTGCAAGTGACCAGCCAAAAAGTAGGTG
ACTTGGCGTTCTTAGACGTAACCGGTCGTATTGCACAGACCCTACTGAACTTGGCGAAACAACCCGACGCGATGACTCAC
CCAGACGGCATGCAGATTAAGATCACTCGTCAAGAGATTGGTCAAATCGTTGGCTGTTCACGTGAAACCGTGGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAAACCATCGTGGTGTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467