Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QSU96_RS14420 Genome accession   NZ_CP128200
Coordinates   3080054..3080644 (-) Length   196 a.a.
NCBI ID   WP_286279665.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3075054..3085644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS14395 (QSU96_14395) aroB 3075401..3076486 (-) 1086 WP_286279663.1 3-dehydroquinate synthase -
  QSU96_RS14400 (QSU96_14400) aroK 3076514..3077032 (-) 519 WP_004728569.1 shikimate kinase AroK -
  QSU96_RS14405 (QSU96_14405) pilQ 3077220..3078944 (-) 1725 WP_286279664.1 type IV pilus secretin PilQ family protein Machinery gene
  QSU96_RS14410 (QSU96_14410) pilP 3078969..3079481 (-) 513 WP_154180461.1 pilus assembly protein PilP Machinery gene
  QSU96_RS14415 (QSU96_14415) pilO 3079471..3080061 (-) 591 WP_158141364.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSU96_RS14420 (QSU96_14420) pilN 3080054..3080644 (-) 591 WP_286279665.1 PilN domain-containing protein Machinery gene
  QSU96_RS14425 (QSU96_14425) pilM 3080634..3081638 (-) 1005 WP_004728564.1 type IV pilus assembly protein PilM Machinery gene
  QSU96_RS14430 (QSU96_14430) - 3081783..3084263 (+) 2481 WP_143680273.1 PBP1A family penicillin-binding protein -
  QSU96_RS14435 (QSU96_14435) oxyR 3084350..3085246 (-) 897 WP_014204332.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21959.06 Da        Isoelectric Point: 8.1375

>NTDB_id=846739 QSU96_RS14420 WP_286279665.1 3080054..3080644(-) (pilN) [Vibrio furnissii strain VFBJ07]
MVHDINLMPWREARREAHKRRFAGLCVLAVLAALGLQWGAGAYIDSQTQVQQQRLDFLNQHIRDLDNQIAALKVTEQEHK
ALLTRLSVVESLQQKRNKTTEFMNLMPQLIPEGVYVDKIKMNGQEIELSGISDSTARLATMLDNLEKSDQLSEVGMHSIV
AGNRRFGKQFQSFKVSFLFHASSQQAVSADTGGAHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=846739 QSU96_RS14420 WP_286279665.1 3080054..3080644(-) (pilN) [Vibrio furnissii strain VFBJ07]
ATGGTGCATGACATCAATTTAATGCCGTGGCGAGAAGCGCGGCGTGAAGCTCATAAACGCCGTTTTGCCGGTTTGTGTGT
ACTGGCGGTGCTGGCCGCGTTGGGACTGCAATGGGGCGCAGGAGCGTATATCGACAGTCAAACGCAAGTGCAGCAGCAAC
GGCTGGATTTTCTCAACCAACACATTCGTGACTTAGACAACCAAATTGCGGCGTTGAAGGTGACTGAGCAAGAGCATAAG
GCGTTGTTGACCCGCTTGTCGGTGGTGGAGTCGTTGCAGCAGAAACGCAACAAGACCACTGAGTTCATGAACTTGATGCC
CCAACTGATCCCGGAAGGCGTCTACGTCGACAAAATCAAAATGAACGGTCAGGAAATTGAGCTGAGTGGCATCAGCGACA
GCACCGCGCGGCTGGCAACCATGCTCGATAATTTGGAGAAATCCGACCAACTGTCTGAGGTCGGTATGCATTCGATTGTG
GCGGGTAACCGTCGGTTTGGTAAGCAATTTCAGAGTTTTAAAGTGTCGTTCTTGTTCCACGCTTCATCGCAGCAAGCGGT
GAGTGCTGATACCGGAGGTGCCCATGGCTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

69.543

100

0.699
  pilN Vibrio campbellii strain DS40M4

63.388

93.367

0.592