Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QSU96_RS14405 Genome accession   NZ_CP128200
Coordinates   3077220..3078944 (-) Length   574 a.a.
NCBI ID   WP_286279664.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3072220..3083944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS14385 (QSU96_14385) - 3072910..3073740 (-) 831 WP_055465832.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  QSU96_RS14390 (QSU96_14390) - 3073835..3075355 (-) 1521 WP_286279662.1 AAA family ATPase -
  QSU96_RS14395 (QSU96_14395) aroB 3075401..3076486 (-) 1086 WP_286279663.1 3-dehydroquinate synthase -
  QSU96_RS14400 (QSU96_14400) aroK 3076514..3077032 (-) 519 WP_004728569.1 shikimate kinase AroK -
  QSU96_RS14405 (QSU96_14405) pilQ 3077220..3078944 (-) 1725 WP_286279664.1 type IV pilus secretin PilQ family protein Machinery gene
  QSU96_RS14410 (QSU96_14410) pilP 3078969..3079481 (-) 513 WP_154180461.1 pilus assembly protein PilP Machinery gene
  QSU96_RS14415 (QSU96_14415) pilO 3079471..3080061 (-) 591 WP_158141364.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSU96_RS14420 (QSU96_14420) pilN 3080054..3080644 (-) 591 WP_286279665.1 PilN domain-containing protein Machinery gene
  QSU96_RS14425 (QSU96_14425) pilM 3080634..3081638 (-) 1005 WP_004728564.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 61948.61 Da        Isoelectric Point: 4.4610

>NTDB_id=846736 QSU96_RS14405 WP_286279664.1 3077220..3078944(-) (pilQ) [Vibrio furnissii strain VFBJ07]
MIKGLNASTAWGIRCLFVGVCLLLSAATFAQEAAANQLKNIDFRINKDKAAVLIVELASASAVVDVQKTEQGLTIELLKT
DVSDDKLYLVDVRDFATSVENIEVFRQQPSTVLVATVQGAFNYEYSLKGNYLEVVISKVSAQEPQPKSVLEKEGKLISIN
FQDIPVRNVLQLIADYNQFNLVVSDSVSGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDRREQQQLEK
ARMAEELGDLQSEIIKINFAKASDIAQMIGGDGAVNMLSERGSISIDERTNALLLRELPDNIHVIRDIVASLDIPVKQVQ
IEARIVTVNEGDLDELGVRWGFSSTNGSTTAGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVNLAATSANASSIAFQVA
KLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLV
LDLSVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGK
SELLIFVTPKVVIQ

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=846736 QSU96_RS14405 WP_286279664.1 3077220..3078944(-) (pilQ) [Vibrio furnissii strain VFBJ07]
ATGATTAAAGGACTAAATGCCTCCACGGCTTGGGGAATACGTTGTCTGTTCGTGGGCGTATGCCTGCTGTTATCTGCCGC
CACATTTGCCCAGGAAGCGGCGGCCAATCAGCTGAAAAATATTGACTTTCGCATCAATAAAGACAAAGCGGCGGTGTTGA
TTGTCGAACTGGCGTCGGCTTCTGCGGTGGTGGATGTGCAGAAAACGGAGCAAGGATTGACGATCGAATTGCTTAAAACC
GATGTTAGCGATGACAAACTGTATTTGGTGGACGTGCGCGATTTTGCCACGTCGGTGGAAAACATCGAAGTGTTTCGCCA
GCAACCGAGCACGGTGCTGGTGGCGACGGTGCAAGGGGCATTCAATTACGAATACAGCCTGAAAGGCAATTACTTGGAGG
TGGTGATCAGCAAAGTCAGTGCGCAAGAACCGCAACCGAAAAGTGTCTTAGAAAAAGAAGGTAAGCTGATTTCGATTAAC
TTCCAAGACATTCCCGTGCGCAACGTGCTGCAGCTCATCGCCGACTACAACCAGTTCAACTTGGTGGTCTCTGATTCCGT
CAGCGGTAACTTGACATTGCGCCTCGATGGCGTGCCGTGGCAACAAGTGCTGGATATCATTTTACAAGTCAAAGGGCTGG
ACAAACGGGTCGATGGCAACGTCATTCTGGTGGCACCCAAAGAGGAGCTGGACCGACGCGAGCAGCAGCAATTGGAAAAG
GCGCGCATGGCGGAAGAGCTGGGCGATCTGCAATCGGAAATCATCAAAATCAATTTCGCCAAGGCATCTGACATTGCACA
GATGATTGGCGGCGATGGTGCGGTGAACATGTTGTCGGAGCGTGGCTCCATCAGTATTGATGAGCGCACCAACGCCTTGC
TACTGCGCGAGCTGCCTGACAACATTCACGTGATCCGCGACATCGTGGCCTCTCTCGACATTCCGGTCAAACAAGTGCAA
ATCGAAGCGCGCATCGTCACGGTGAATGAGGGCGATTTGGATGAGCTTGGCGTGCGCTGGGGCTTTAGTTCCACCAACGG
GAGCACCACCGCTGGTGGCTCGATTGAAAGTAATCTCGGTGCCATTGGGTTGTATGACGGCAGCAGTGATTCGGGTGATG
GCGCCGCGATTGATGATTTCCTCAATGTGAACCTTGCTGCTACCTCCGCCAATGCATCCAGTATTGCGTTTCAGGTGGCC
AAGTTGGGCGCTGACACCTTACTTGATCTTGAATTGTCGGCGATGCAGCGCGAGTCGAAAGCGGAAATTATTTCCAGCCC
AAGGCTGATCACCACCAACAAACAACCGGCTTACATTGAACAGGGGACGGAAATTCCTTATCTCGAATCGTCCTCCAGTG
GCGCAACCAGCGTGGCATTTAAAAAAGCGGTCCTCAGCCTCAAAGTGACCCCGCAAATCACGCCTGACAACCGTTTGGTG
CTCGATTTGAGCGTCACCCAAGACCGACCGGGTGAAGTGGTGAAAACGGGCACGGGCGAAGCGGTGGCGATTAACACGCA
GCGTATTGGGACCCAAGTGTTAGTTAATAACGGTGAAACCGTGGTGCTGGGCGGCATTTTTCAACACAGCGTGACCAGTT
CTGTGGACAAAGTGCCCTTGCTTGGGGACTTGCCATTACTGGGCGCGCTGTTCCGTCGCAGCTACGAACAGATGGGGAAA
AGTGAGCTACTGATCTTCGTCACGCCGAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(414-572)

Secretin and TonB N terminus short domain (STN)

(179-227)

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

80.729

100

0.81
  pilQ Vibrio cholerae strain A1552

80.729

100

0.81
  pilQ Vibrio campbellii strain DS40M4

77.413

95.645

0.74
  pilQ Pseudomonas aeruginosa PAK

39.86

99.652

0.397
  pilQ Legionella pneumophila strain ERS1305867

41.575

95.122

0.395
  pilQ Legionella pneumophila strain Lp02

41.575

95.122

0.395
  comQ Acinetobacter baylyi ADP1

38.737

100

0.395
  pilQ Acinetobacter baumannii D1279779

37.113

100

0.376
  pilQ Acinetobacter baumannii strain A118

37.113

100

0.376