Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QSU96_RS01640 Genome accession   NZ_CP128200
Coordinates   346308..346841 (+) Length   177 a.a.
NCBI ID   WP_014205867.1    Uniprot ID   A0A0Q2XSJ5
Organism   Vibrio furnissii strain VFBJ07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 341308..351841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS01625 (QSU96_01625) uvrA 341417..344239 (-) 2823 WP_286279798.1 excinuclease ABC subunit UvrA -
  QSU96_RS01630 (QSU96_01630) galU 344377..345246 (-) 870 WP_172561867.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QSU96_RS01635 (QSU96_01635) qstR 345375..346025 (-) 651 WP_014205868.1 LuxR C-terminal-related transcriptional regulator Regulator
  QSU96_RS01640 (QSU96_01640) ssb 346308..346841 (+) 534 WP_014205867.1 single-stranded DNA-binding protein Machinery gene
  QSU96_RS01645 (QSU96_01645) csrD 346977..348971 (+) 1995 WP_232658404.1 RNase E specificity factor CsrD -
  QSU96_RS01650 (QSU96_01650) - 348979..350424 (+) 1446 WP_286279799.1 MSHA biogenesis protein MshI -
  QSU96_RS01655 (QSU96_01655) gspM 350424..351074 (+) 651 WP_004724077.1 type II secretion system protein GspM -
  QSU96_RS01660 (QSU96_01660) - 351067..351378 (+) 312 WP_004724074.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19671.81 Da        Isoelectric Point: 5.7626

>NTDB_id=846710 QSU96_RS01640 WP_014205867.1 346308..346841(+) (ssb) [Vibrio furnissii strain VFBJ07]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGGRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=846710 QSU96_RS01640 WP_014205867.1 346308..346841(+) (ssb) [Vibrio furnissii strain VFBJ07]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTGGCCGTCAACAAGGCGGTATGCCAGCACAGGGCGGTGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAGCCTCAGCAACCCGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2XSJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

90.503

100

0.915
  ssb Glaesserella parasuis strain SC1401

54.098

100

0.559
  ssb Neisseria meningitidis MC58

48.023

100

0.48
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.48