Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QSU96_RS01635 Genome accession   NZ_CP128200
Coordinates   345375..346025 (-) Length   216 a.a.
NCBI ID   WP_014205868.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ07     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 340375..351025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS01625 (QSU96_01625) uvrA 341417..344239 (-) 2823 WP_286279798.1 excinuclease ABC subunit UvrA -
  QSU96_RS01630 (QSU96_01630) galU 344377..345246 (-) 870 WP_172561867.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QSU96_RS01635 (QSU96_01635) qstR 345375..346025 (-) 651 WP_014205868.1 LuxR C-terminal-related transcriptional regulator Regulator
  QSU96_RS01640 (QSU96_01640) ssb 346308..346841 (+) 534 WP_014205867.1 single-stranded DNA-binding protein Machinery gene
  QSU96_RS01645 (QSU96_01645) csrD 346977..348971 (+) 1995 WP_232658404.1 RNase E specificity factor CsrD -
  QSU96_RS01650 (QSU96_01650) - 348979..350424 (+) 1446 WP_286279799.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24779.49 Da        Isoelectric Point: 8.7565

>NTDB_id=846709 QSU96_RS01635 WP_014205868.1 345375..346025(-) (qstR) [Vibrio furnissii strain VFBJ07]
MQRANYARTIYYLCLDATLPPPPPLGDALTRLALPVPQIEPEQLLQAYQADKHKILLFNYGEHDAIRQRLGPLPITSPHL
ETILFGVEKRLRTEELLTFGNLKGLFYQDDAPSSIAQGLAEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRE
LQILRSLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAITWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=846709 QSU96_RS01635 WP_014205868.1 345375..346025(-) (qstR) [Vibrio furnissii strain VFBJ07]
ATGCAACGCGCCAATTACGCCCGAACGATTTACTATTTGTGTCTGGATGCCACCCTCCCTCCGCCACCCCCATTGGGTGA
CGCACTCACACGACTCGCCCTGCCTGTGCCACAGATTGAACCCGAACAACTGTTGCAAGCGTATCAAGCCGACAAACATA
AAATCCTACTGTTTAATTATGGTGAACATGACGCGATTCGCCAGCGTTTAGGCCCCTTGCCCATCACCAGCCCCCACTTG
GAAACCATTTTATTTGGTGTAGAAAAACGCCTGCGCACGGAAGAACTTCTCACCTTTGGCAACCTGAAAGGCTTGTTTTA
TCAAGATGACGCGCCCTCATCGATCGCGCAGGGATTGGCGGAAATCATCAACGGTCAGAATTGGCTGCCACGCCATGTCA
GCAGTCAGTTGTTGCATTACTATCGCCACATTTTCCAGCATCATCACACGCAAGCAACCATCGAGCTCACCACACGTGAA
TTACAAATCCTACGCAGCTTGCAGACGGGCGCCTCAAACATGCAGATGGCGGAGAGCCTGTTCATCAGTGAATTTACCGT
CAAGTCGCACCTCTATCAGATCTTTAAAAAGCTCTCGGTCAAGAACCGAACCCAAGCCATCACATGGGCCAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

70.968

100

0.713
  qstR Vibrio parahaemolyticus RIMD 2210633

50.224

100

0.519
  qstR Vibrio campbellii strain DS40M4

51.389

100

0.514