Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | VXF94_RS17995 | Genome accession | NZ_CP143956 |
| Coordinates | 3487211..3488215 (+) | Length | 334 a.a. |
| NCBI ID | WP_013353043.1 | Uniprot ID | A0A9P1JIP2 |
| Organism | Bacillus amyloliquefaciens strain Fad 108 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 3482211..3493215
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VXF94_RS17970 (VXF94_17970) | nadA | 3482451..3483554 (+) | 1104 | WP_014470778.1 | quinolinate synthase NadA | - |
| VXF94_RS17975 (VXF94_17975) | safA | 3483681..3484832 (+) | 1152 | WP_014470777.1 | spore coat assembly protein SafA | - |
| VXF94_RS17980 (VXF94_17980) | - | 3484981..3485574 (+) | 594 | WP_014470776.1 | YhcN/YlaJ family sporulation lipoprotein | - |
| VXF94_RS21595 | - | 3485699..3485818 (+) | 120 | WP_014470775.1 | hypothetical protein | - |
| VXF94_RS17985 (VXF94_17985) | - | 3485984..3486460 (+) | 477 | WP_038463270.1 | intercompartmental signaling factor BofC | - |
| VXF94_RS17990 (VXF94_17990) | ruvA | 3486595..3487200 (+) | 606 | WP_003152683.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| VXF94_RS17995 (VXF94_17995) | ruvB | 3487211..3488215 (+) | 1005 | WP_013353043.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| VXF94_RS18000 (VXF94_18000) | - | 3488208..3488408 (+) | 201 | WP_013353042.1 | DUF2905 domain-containing protein | - |
| VXF94_RS18005 (VXF94_18005) | queA | 3488434..3489462 (+) | 1029 | WP_013353041.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| VXF94_RS18010 (VXF94_18010) | tgt | 3489490..3490635 (+) | 1146 | WP_014472142.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| VXF94_RS18015 (VXF94_18015) | yajC | 3490667..3490927 (+) | 261 | WP_003152695.1 | preprotein translocase subunit YajC | - |
| VXF94_RS18020 (VXF94_18020) | - | 3490980..3491366 (-) | 387 | WP_013353039.1 | TIGR04086 family membrane protein | - |
| VXF94_RS18025 (VXF94_18025) | - | 3491533..3492189 (+) | 657 | WP_013353038.1 | DUF421 domain-containing protein | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37200.48 Da Isoelectric Point: 4.6703
>NTDB_id=845644 VXF94_RS17995 WP_013353043.1 3487211..3488215(+) (ruvB) [Bacillus amyloliquefaciens strain Fad 108]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTAEVFEVEIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPACD
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTAEVFEVEIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPACD
Nucleotide
Download Length: 1005 bp
>NTDB_id=845644 VXF94_RS17995 WP_013353043.1 3487211..3488215(+) (ruvB) [Bacillus amyloliquefaciens strain Fad 108]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAACCTCGC
CCAGTACATCGGGCAGCAGAAGGTAAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTTG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGAAAAACAACGCTCGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGCCCCGCTATCGAAAGACCGGGAGACTTGGCAGCCATTCTGACGGCGCTCGAACCCGGGGATGT
GCTGTTTATAGACGAAATTCACAGACTGAACCGCTCAATCGAAGAAGTGCTGTACCCGGCGATGGAGGACTTCTGCCTTG
ATATCGTTATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGCCTTGACCTTCCGCCTTTTACGCTGGTAGGAGCGACGACC
AGGGTCGGCTTATTGACCGCGCCGCTCAGAGACCGGTTCGGGGTGCTGTCCCGCCTTGAATACTATACGCAGGAAGAACT
GACAGATATCGTGTCAAGAACGGCTGAAGTATTCGAAGTTGAAATCGAAGAAGCCCCGGCTTTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAAGTGCTAGGTGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGACGCACTCGGCCTTGACCATATTGACCATAAGCTGCT
GATGGGCATGATTGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGTGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTTCAGATCGGATTTCTCCAAAGGACGCCGAGAGGACGGGTCGTGACCCCG
GCTGTGTATGAGCATTTTCGATTGGAGGCACCCGCCTGTGACTGA
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAACCTCGC
CCAGTACATCGGGCAGCAGAAGGTAAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTTG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGAAAAACAACGCTCGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGCCCCGCTATCGAAAGACCGGGAGACTTGGCAGCCATTCTGACGGCGCTCGAACCCGGGGATGT
GCTGTTTATAGACGAAATTCACAGACTGAACCGCTCAATCGAAGAAGTGCTGTACCCGGCGATGGAGGACTTCTGCCTTG
ATATCGTTATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGCCTTGACCTTCCGCCTTTTACGCTGGTAGGAGCGACGACC
AGGGTCGGCTTATTGACCGCGCCGCTCAGAGACCGGTTCGGGGTGCTGTCCCGCCTTGAATACTATACGCAGGAAGAACT
GACAGATATCGTGTCAAGAACGGCTGAAGTATTCGAAGTTGAAATCGAAGAAGCCCCGGCTTTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAAGTGCTAGGTGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGACGCACTCGGCCTTGACCATATTGACCATAAGCTGCT
GATGGGCATGATTGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGTGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTTCAGATCGGATTTCTCCAAAGGACGCCGAGAGGACGGGTCGTGACCCCG
GCTGTGTATGAGCATTTTCGATTGGAGGCACCCGCCTGTGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
91.916 |
100 |
0.919 |
| ruvB | Streptococcus pneumoniae TIGR4 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae R6 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae D39 |
60.736 |
97.605 |
0.593 |
| ruvB | Synechocystis sp. PCC 6803 |
58.359 |
98.503 |
0.575 |
| ruvB | Helicobacter pylori 26695 |
52.439 |
98.204 |
0.515 |