Detailed information NTG0845643

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: VXF94_RS17990
• Genome accession: NZ_CP143956
• Coordinates: 3486595..3487200 (+)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens strain Fad 108
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3481595..3492200

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXF94_RS17965 (VXF94_17965)	nadC	3481603..3482451 (+)	849	WP_014472144.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VXF94_RS17970 (VXF94_17970)	nadA	3482451..3483554 (+)	1104	WP_014470778.1	quinolinate synthase NadA	-
VXF94_RS17975 (VXF94_17975)	safA	3483681..3484832 (+)	1152	WP_014470777.1	spore coat assembly protein SafA	-
VXF94_RS17980 (VXF94_17980)	-	3484981..3485574 (+)	594	WP_014470776.1	YhcN/YlaJ family sporulation lipoprotein	-
VXF94_RS21595	-	3485699..3485818 (+)	120	WP_014470775.1	hypothetical protein	-
VXF94_RS17985 (VXF94_17985)	-	3485984..3486460 (+)	477	WP_038463270.1	intercompartmental signaling factor BofC	-
VXF94_RS17990 (VXF94_17990)	ruvA	3486595..3487200 (+)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
VXF94_RS17995 (VXF94_17995)	ruvB	3487211..3488215 (+)	1005	WP_013353043.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
VXF94_RS18000 (VXF94_18000)	-	3488208..3488408 (+)	201	WP_013353042.1	DUF2905 domain-containing protein	-
VXF94_RS18005 (VXF94_18005)	queA	3488434..3489462 (+)	1029	WP_013353041.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
VXF94_RS18010 (VXF94_18010)	tgt	3489490..3490635 (+)	1146	WP_014472142.1	tRNA guanosine(34) transglycosylase Tgt	-
VXF94_RS18015 (VXF94_18015)	yajC	3490667..3490927 (+)	261	WP_003152695.1	preprotein translocase subunit YajC	-
VXF94_RS18020 (VXF94_18020)	-	3490980..3491366 (-)	387	WP_013353039.1	TIGR04086 family membrane protein	-
VXF94_RS18025 (VXF94_18025)	-	3491533..3492189 (+)	657	WP_013353038.1	DUF421 domain-containing protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=845643 VXF94_RS17990 WP_003152683.1 3486595..3487200(+) (ruvA) [Bacillus amyloliquefaciens strain Fad 108]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=845643 VXF94_RS17990 WP_003152683.1 3486595..3487200(+) (ruvA) [Bacillus amyloliquefaciens strain Fad 108]
GTGATTGAATTCGTGAAGGGGACGATTGATTACGTATCGCCCCAATACATCGTGATTGAAAACGGCGGGATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG
CCTTTTCTTTGTATGGCTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAATGTCACCGGCATCGGTCCG
AAAGGGGCGCTCGCCATTCTCGGTTCCGGTGATCCGGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCTGGTGTGGGCAAAAAAACGGCACGGCAGATTATTCTTGATTTGAAAGGCAAATTGGCCGATGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGATGAGGCGCTT
GAAGCGCTCAGGGTACTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGACCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408