Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R1N_RS22950 Genome accession   NZ_AP024281
Coordinates   4713477..4714997 (+) Length   506 a.a.
NCBI ID   WP_033146920.1    Uniprot ID   -
Organism   Enterobacter asburiae strain Ent261     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4708477..4719997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1N_RS22925 (R1N_44990) ilvE 4710044..4710973 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  R1N_RS22930 (R1N_45000) ilvM 4710992..4711255 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  R1N_RS22935 (R1N_45010) ilvG 4711252..4712898 (-) 1647 WP_033146919.1 acetolactate synthase 2 catalytic subunit -
  R1N_RS22940 ilvX 4712901..4712951 (-) 51 WP_166792073.1 peptide IlvX -
  R1N_RS22945 ilvL 4713038..4713136 (-) 99 WP_001311244.1 ilv operon leader peptide -
  R1N_RS22950 (R1N_45020) comM 4713477..4714997 (+) 1521 WP_033146920.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R1N_RS22955 (R1N_45030) - 4715028..4715366 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  R1N_RS22960 (R1N_45040) hdfR 4715485..4716306 (+) 822 WP_023309659.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54991.93 Da        Isoelectric Point: 6.8204

>NTDB_id=84528 R1N_RS22950 WP_033146920.1 4713477..4714997(+) (comM) [Enterobacter asburiae strain Ent261]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLINSTSLQKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCNDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=84528 R1N_RS22950 WP_033146920.1 4713477..4714997(+) (comM) [Enterobacter asburiae strain Ent261]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATTTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCCCTTGAAGCCATACGAGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCCGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGGCATGAACTGTCCGAGCCGGAGGAGTGTGATGATGTTATAGCGGATGCACC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGGCCGCCAGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAATTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGGCGATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAACTGCCTGAATTTGAGCGCCGTGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACCAGAGCCAAAATAAGCTATCCCGCACAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACACCAGAGCAAACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCAGCCCAGACACGGCAGTACGCTCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCACTTAATGTTGAGGATGCGGGATGGCTGGAGGAGACGTTAACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACCATTGCTGACGTAGAGGGGTGCAATGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

58.449

99.407

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.59

100

0.437

Multiple sequence alignment