Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QSG87_RS15895 Genome accession   NZ_CP127923
Coordinates   3256697..3257140 (-) Length   147 a.a.
NCBI ID   WP_317023594.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3251697..3262140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS15860 (QSG87_15865) - 3251927..3253021 (-) 1095 WP_087549879.1 PilW family protein -
  QSG87_RS15865 (QSG87_15870) pilV 3253023..3253532 (-) 510 WP_317023590.1 type IV pilus modification protein PilV -
  QSG87_RS15870 (QSG87_15875) - 3253529..3254026 (-) 498 WP_317023591.1 GspH/FimT family pseudopilin -
  QSG87_RS15875 (QSG87_15880) rplS 3254408..3254782 (-) 375 WP_087512175.1 50S ribosomal protein L19 -
  QSG87_RS15880 (QSG87_15885) trmD 3254920..3255666 (-) 747 WP_317023592.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QSG87_RS15885 (QSG87_15890) rimM 3255720..3256268 (-) 549 WP_317023593.1 ribosome maturation factor RimM -
  QSG87_RS15890 (QSG87_15895) rpsP 3256297..3256554 (-) 258 WP_087512172.1 30S ribosomal protein S16 -
  QSG87_RS15895 (QSG87_15900) comF 3256697..3257140 (-) 444 WP_317023594.1 type IV pilin protein Machinery gene
  QSG87_RS15900 (QSG87_15905) - 3257134..3257691 (-) 558 WP_087549876.1 type IV pilin protein -
  QSG87_RS15905 (QSG87_15910) - 3257701..3261543 (-) 3843 WP_317023595.1 pilus assembly protein PilY -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15991.17 Da        Isoelectric Point: 9.3610

>NTDB_id=845259 QSG87_RS15895 WP_317023594.1 3256697..3257140(-) (comF) [Acinetobacter chinensis strain SAAc573]
MVMRLYRGFTLIELMIVVAIIAILAAIAYPSYQEYVRKTKRAEMQSEMMSIATNLQSYRAINHNYTGAKLSNSGLSQSFP
ATGTANYTLNLSVAAQTWTLTAQPQNGQAGNGHLVLNNLGHKCWTKGSDDNSGSACAPTALTNWDGR

Nucleotide


Download         Length: 444 bp        

>NTDB_id=845259 QSG87_RS15895 WP_317023594.1 3256697..3257140(-) (comF) [Acinetobacter chinensis strain SAAc573]
ATGGTAATGCGGCTGTACAGGGGGTTTACTCTGATTGAGTTAATGATCGTGGTTGCGATTATTGCCATTCTAGCGGCAAT
TGCATATCCGTCTTATCAGGAATATGTGCGGAAAACTAAACGTGCAGAAATGCAAAGCGAGATGATGAGCATAGCAACGA
ACCTGCAAAGTTACAGGGCGATCAATCATAATTACACCGGAGCGAAACTGAGTAACTCGGGTCTGTCACAGAGCTTTCCA
GCAACAGGTACAGCAAATTATACATTGAACCTGTCTGTAGCGGCACAGACCTGGACGCTTACAGCACAGCCACAAAATGG
TCAGGCAGGCAATGGGCATCTTGTTCTGAATAACCTGGGGCATAAGTGCTGGACCAAAGGCAGTGATGACAACAGTGGTT
CAGCATGTGCGCCAACAGCACTGACCAACTGGGATGGTCGCTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-110)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

51.007

100

0.517
  pilE Acinetobacter baumannii D1279779

48.227

95.918

0.463
  comE Acinetobacter baylyi ADP1

35.22

100

0.381