Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QSG87_RS15540 Genome accession   NZ_CP127923
Coordinates   3182489..3183151 (+) Length   220 a.a.
NCBI ID   WP_317023553.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3177489..3188151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS15525 (QSG87_15525) - 3178711..3179499 (-) 789 WP_317023550.1 NAD(P)H-binding protein -
  QSG87_RS15530 (QSG87_15530) recG 3179559..3181604 (+) 2046 WP_317023551.1 ATP-dependent DNA helicase RecG -
  QSG87_RS15535 (QSG87_15535) - 3181618..3182379 (-) 762 WP_317023552.1 DUF4184 family protein -
  QSG87_RS15540 (QSG87_15540) comF 3182489..3183151 (+) 663 WP_317023553.1 phosphoribosyltransferase family protein Machinery gene
  QSG87_RS15545 (QSG87_15545) - 3183148..3183558 (-) 411 WP_317023554.1 NUDIX domain-containing protein -
  QSG87_RS15550 (QSG87_15550) - 3183637..3184233 (-) 597 WP_317024771.1 TIGR00730 family Rossman fold protein -
  QSG87_RS15555 (QSG87_15555) - 3184390..3185403 (+) 1014 WP_087549926.1 CorA family divalent cation transporter -
  QSG87_RS15560 (QSG87_15560) - 3185555..3185842 (-) 288 WP_087549925.1 lipid asymmetry maintenance protein MlaB -
  QSG87_RS15565 (QSG87_15565) - 3185855..3186481 (-) 627 WP_087549924.1 phospholipid-binding protein MlaC -
  QSG87_RS15570 (QSG87_15570) - 3186500..3187183 (-) 684 WP_087512844.1 outer membrane lipid asymmetry maintenance protein MlaD -
  QSG87_RS15575 (QSG87_15575) mlaE 3187183..3187962 (-) 780 WP_317023555.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25343.58 Da        Isoelectric Point: 8.9684

>NTDB_id=845258 QSG87_RS15540 WP_317023553.1 3182489..3183151(+) (comF) [Acinetobacter chinensis strain SAAc573]
MLSFINQLLHKGVQSISPCLLCGIDRQQQHSLCADCWEQLPWYKQHIQRHEHSILCAHHYDFPMNRIIQTYKYEQQLQYQ
NLLAHSLLNLKTPKVQAIVPMPISTERLKERGYNQMLIIAKIMAKELKIPVWQPVIRAAQYSQKGLSRIERLENIEEQFQ
IIPAEKRKYRKVLIIDDVVTTGSSIHALSQALEKLGCQQIYSACIAVAGTKQSSLPLGES

Nucleotide


Download         Length: 663 bp        

>NTDB_id=845258 QSG87_RS15540 WP_317023553.1 3182489..3183151(+) (comF) [Acinetobacter chinensis strain SAAc573]
ATGCTCTCATTCATCAACCAATTGCTCCATAAAGGTGTACAAAGCATCTCCCCTTGCCTGCTCTGTGGCATAGACCGCCA
GCAACAGCATTCACTCTGTGCAGACTGCTGGGAACAACTGCCGTGGTACAAGCAACACATCCAGCGTCATGAACACAGCA
TCCTTTGCGCACACCATTATGACTTTCCCATGAACCGGATTATTCAGACTTATAAATATGAACAGCAGCTCCAGTATCAG
AATCTGCTCGCACACAGCTTACTGAATTTAAAAACTCCCAAAGTTCAAGCCATTGTTCCTATGCCCATTTCCACGGAACG
ACTTAAAGAACGTGGTTACAACCAGATGTTGATCATTGCAAAAATTATGGCGAAAGAACTGAAAATCCCTGTATGGCAAC
CTGTGATCCGTGCAGCGCAATATTCACAAAAAGGCTTAAGTCGCATCGAACGACTGGAAAATATCGAAGAACAGTTTCAG
ATCATTCCAGCAGAAAAAAGAAAATACCGTAAAGTACTGATCATTGATGATGTGGTCACCACAGGAAGTTCAATTCATGC
ACTCAGCCAAGCCTTAGAAAAACTTGGCTGTCAGCAGATTTACAGTGCATGTATCGCTGTTGCGGGAACAAAACAGTCCT
CTCTCCCTCTGGGAGAGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

62.085

95.909

0.595
  comF Acinetobacter baumannii D1279779

61.611

95.909

0.591