Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   QSG85_RS01600 Genome accession   NZ_CP127906
Coordinates   347378..347860 (+) Length   160 a.a.
NCBI ID   WP_001046421.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342378..352860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS01590 (QSG85_01590) pilX 342681..343499 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QSG85_RS01595 (QSG85_01595) pilY1 343511..347365 (+) 3855 WP_272252015.1 PilC/PilY family type IV pilus protein Machinery gene
  QSG85_RS01600 (QSG85_01600) pilY2 347378..347860 (+) 483 WP_001046421.1 type IV pilin protein Machinery gene
  QSG85_RS01605 (QSG85_01605) pilE 347857..348282 (+) 426 WP_272252019.1 type IV pilin protein Machinery gene
  QSG85_RS01610 (QSG85_01610) rpsP 348429..348680 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  QSG85_RS01615 (QSG85_01615) rimM 348700..349248 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  QSG85_RS01620 (QSG85_01620) trmD 349294..350034 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QSG85_RS01625 (QSG85_01625) rplS 350242..350610 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  QSG85_RS01630 (QSG85_01630) - 350662..351603 (-) 942 WP_085916958.1 triacylglycerol lipase -
  QSG85_RS01635 (QSG85_01635) - 351719..352753 (-) 1035 WP_272398421.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17563.78 Da        Isoelectric Point: 8.4834

>NTDB_id=845159 QSG85_RS01600 WP_001046421.1 347378..347860(+) (pilY2) [Acinetobacter baumannii strain SAAb472]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=845159 QSG85_RS01600 WP_001046421.1 347378..347860(+) (pilY2) [Acinetobacter baumannii strain SAAb472]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419