Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   V2195_RS08775 Genome accession   NZ_CP143903
Coordinates   1810147..1810572 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PA13_L17_27.22_ST207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1805147..1815572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2195_RS08760 (V2195_08760) pilX 1805717..1806304 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  V2195_RS08765 (V2195_08765) pilY1 1806316..1809801 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -
  V2195_RS08770 (V2195_08770) pilY2 1809803..1810150 (+) 348 WP_023098087.1 type 4a fimbrial biogenesis protein PilY2 -
  V2195_RS08775 (V2195_08775) comF 1810147..1810572 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  V2195_RS08780 (V2195_08780) ispH 1810619..1811563 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  V2195_RS08785 (V2195_08785) fkpB 1811649..1812089 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  V2195_RS08790 (V2195_08790) lspA 1812082..1812591 (-) 510 WP_003094728.1 signal peptidase II -
  V2195_RS08795 (V2195_08795) ileS 1812584..1815415 (-) 2832 WP_023092936.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=845158 V2195_RS08775 WP_003094721.1 1810147..1810572(+) (comF) [Pseudomonas aeruginosa strain PA13_L17_27.22_ST207]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=845158 V2195_RS08775 WP_003094721.1 1810147..1810572(+) (comF) [Pseudomonas aeruginosa strain PA13_L17_27.22_ST207]
ATGAGGACAAGACAGAAGGGCTTCACGCTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCTGGGGTCGGCTACACCAAGGACGTGGCCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACGCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383