Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   QSG85_RS01605 Genome accession   NZ_CP127906
Coordinates   347857..348282 (+) Length   141 a.a.
NCBI ID   WP_272252019.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342857..353282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS01595 (QSG85_01595) pilY1 343511..347365 (+) 3855 WP_272252015.1 PilC/PilY family type IV pilus protein Machinery gene
  QSG85_RS01600 (QSG85_01600) pilY2 347378..347860 (+) 483 WP_001046421.1 type IV pilin protein Machinery gene
  QSG85_RS01605 (QSG85_01605) pilE 347857..348282 (+) 426 WP_272252019.1 type IV pilin protein Machinery gene
  QSG85_RS01610 (QSG85_01610) rpsP 348429..348680 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  QSG85_RS01615 (QSG85_01615) rimM 348700..349248 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  QSG85_RS01620 (QSG85_01620) trmD 349294..350034 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QSG85_RS01625 (QSG85_01625) rplS 350242..350610 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  QSG85_RS01630 (QSG85_01630) - 350662..351603 (-) 942 WP_085916958.1 triacylglycerol lipase -
  QSG85_RS01635 (QSG85_01635) - 351719..352753 (-) 1035 WP_272398421.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15206.43 Da        Isoelectric Point: 8.4669

>NTDB_id=845160 QSG85_RS01605 WP_272252019.1 347857..348282(+) (pilE) [Acinetobacter baumannii strain SAAb472]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIAKTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=845160 QSG85_RS01605 WP_272252019.1 347857..348282(+) (pilE) [Acinetobacter baumannii strain SAAb472]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTTGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACCTTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAAGACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

96.454

100

0.965
  comF Acinetobacter baylyi ADP1

50.714

99.291

0.504