Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   QSG85_RS01590 Genome accession   NZ_CP127906
Coordinates   342681..343499 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337681..348499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS01555 (QSG85_01555) - 338263..338393 (-) 131 Protein_296 hypothetical protein -
  QSG85_RS01560 (QSG85_01560) rpoZ 338432..338710 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QSG85_RS01565 (QSG85_01565) gmk 338783..339412 (-) 630 WP_000015937.1 guanylate kinase -
  QSG85_RS01570 (QSG85_01570) ispH 339535..340485 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QSG85_RS01575 (QSG85_01575) fimU 340655..341128 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  QSG85_RS01580 (QSG85_01580) pilV 341122..341682 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  QSG85_RS01585 (QSG85_01585) pilW 341683..342684 (+) 1002 WP_000079191.1 PilW family protein Machinery gene
  QSG85_RS01590 (QSG85_01590) pilX 342681..343499 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QSG85_RS01595 (QSG85_01595) pilY1 343511..347365 (+) 3855 WP_272252015.1 PilC/PilY family type IV pilus protein Machinery gene
  QSG85_RS01600 (QSG85_01600) pilY2 347378..347860 (+) 483 WP_001046421.1 type IV pilin protein Machinery gene
  QSG85_RS01605 (QSG85_01605) pilE 347857..348282 (+) 426 WP_272252019.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=845157 QSG85_RS01590 WP_000149374.1 342681..343499(+) (pilX) [Acinetobacter baumannii strain SAAb472]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=845157 QSG85_RS01590 WP_000149374.1 342681..343499(+) (pilX) [Acinetobacter baumannii strain SAAb472]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993